WikiTest – PromotDiana

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Version 4 (modified by miha, 19 years ago) (diff)
--

I have created test wiki page to test some macros and formatting styles.

Timestamp?

class Test:
    def __init__(self):
        print "Hello World"
if __name__ == '__main__':
   Test()

#1: Matlab variable naming is not the same as in Diva
#2: SetVariables stores everything
#3: SBML export fails with correct model
#4: Update of XML export for Diana
#5: Visual Scenarios: Rename scenario does not work
#6: Diva Start from Promot
#7: solve-one-index-range (equationset var to-solve) checks dependencies incorrectly
#8: Problems with differentiation in 3D Fuel Cell model
#9: Generation test models
#10: Incorrect code generation in conditional expressions
#11: Incorrect local sum indices
#12: Incorrect diva variables
#13: Incorrect GetSensitivityModel behaviour
#14: Fatal error after calling Common::Parameter::ICapeParameterSpec::Type()
#15: Wrong java paths
#16: Default values may contain algebraic loops after optimization
#17: Prohibit open models in diana writer
#18: Icon options without GUI produces an error
#19: Fixing of NLPTask model
#20: Multilevel activity
#21: Somehow
#22: DetailVisible attribute
#23: Input position
#24: unstability of promot visual editor
#25: model documentation
#26: Implement DianaSensDAESO
#27: Alias name export for DianaModelData
#28: Petri nets bug
#29: Wrong data transmitted from python to diana with DianaParameter.SetValue function
#30: Strange product warning
#31: Add mdl2diana version option
#32: Write DAE initialization code from Promot
#33: Reserve C++ reserved names in Diana code generation
#34: latex report file of optimizer can not be compiled
#35: Add GUI dialog for Diana
#36: compact export of report files
#37: switching off online reporter of fit
#38: Popup menu has no "Output to Diana" item.
#39: placement of textboxes in CNA
#40: simultaneous coding of reservoirs and multiple levels
#41: SBML find constant species better
#42: SBML crash for specific parameters
#43: class cast exception while drag and drop of element from palette to editor pane
#44: Open a file fails
#45: Changing focus after editing in variable table, the edit values are lost.
#46: [6202] produces NullPointers
#47: Area behaviour of Polylines
#48: PVMAP sometimes contains 11-chars keys (state)
#49: GINY: arrows are not updated
#50: GINY: error in calculation of intersection of edge and rounded rectangle
#51: using the "t" time in matlab expressions fails.
#52: Using image export the tooltip will also be exported when main windows has focus not export dialog.
#53: Same calculators in Explorer are used in different scenarios
#54: Input line in ModelOutputDialog does not work, only the Chooser button works
#55: File Chooser does not work with java 1.5+
#56: EPS (PDF) export does not work with hierarchical networks
#57: Wrong scale factor of adapter elements in dynamic library
#58: Problem with the focus after selecting all the blocks.
#59: Visual editor allows only small drawings
#60: two visual scenarios with the same name forces exception
#61: Change canonical name to id
#62: Problems while navigating the search results
#63: Change properties of a global scenario is possible by leaving the set properties dialog open
#64: Using reduced struct-library, logical network scenario fails
#65: Structure Library update
#66: Add new interface to DianaPetriNet/DianaDAESO
#67: change-class of ModuleSlotProxy disconnects Propagation
#68: Model generation does not contain transition linkage
#69: XML reading should read petri linkage.
#70: defval attributes should be exported in metabolites to CNA
#71: Forking flag for Places
#72: Class changes do not change the moduleslotproxies
#73: Implement Explicit Transitions in Petrinet
#74: diana translate expression does not translate :mod
#75: Strange delete behaviour
#76: Slot-Class changing fails
#77: SBML import Stuttgart defect
#78: Apply scenario should be accessed more directly, not using 'Edit Scenarios'
#79: After source changes, netports keep garbage edges
#80: FDL forgets about weak slots
#81: model-names are too long when having indices
#82: Calculation of initial values does not work with indices in all levels
#83: Dropping terminals does not set Location correctly
#84: When dropping classes from browser to constructionarea, the class does not appear in pallette
#85: Update of TerminalEdges after Class change undo fails, inner terminal has wrong id.
#86: Move lisp utilities to Promot directory (Win build)
#87: Linkproxy update from source
#88: leave only one promot-config-build.lisp, no symlinks
#89: Store undo information in loadMdlFile
#90: CmdDelete Redo should have classnames for finding promottreenodes
#91: new variable for reactions (exclude in logical analysis) to export to cna
#92: Mapping for given attribute is erroneously not supported
#93: Link edges reappear after dispose
#94: add superclass in palettewindow does not work
#95: remove default values not possible
#96: Adapters in logical models should be ignored in trace-not.
#97: Redirect promot binding to localhost
#98: Rewrite SignalHandler to shutdownHook
#99: Close "Set Scenario Properties"- dialog when changing from local to global scenario
#100: getSlots() causes exception
#101: confirming of delete-action for a promot-class
#102: Update Math in Documentation.
#103: Add introduction to discrete modeling to documentation.
#104: renaming of connected elements in the visual editor fails
#105: mehrere compounds an einem linknode fuehren im visual explorer zu ueberfluessigen kanten
#106: generate jacobian for diva export doesnt work -> remove option?
#107: wrong variable index reported in algebraic loops
#108: update libsbml binding for lisp
#109: extend checker for allowed terminal-types on a link in dynamical models.
#110: add import dialog for parsed cna models
#111: Edit handle points of TerminalEdge
#112: recalculation of LinkNode position after reloading a LinkProxy
#113: priorities for check results
#114: setting gif icon should be possible via gui
#115: restructure jars and used path to simplify installation (for non root)
#116: tracking saved/modified status of classes
#117: Different handling in function "Export to logical model"
#118: Some hierarchical links are set not correctly in the HTML documentation
#119: attempted deletion of superclass-slots in visual editing should give a feedback..
#120: erroneous calculation of LinkNode positions in undo: Fit Module Size To Content
#121: ConstructionArea of the PaletteWindow sometimes doesn't appear
#122: feedback for checker status
#123: delete of set of PromotTreeNodes
#124: configure scripts doesnt work with autoconf 2.62
#125: improve test coverage
#126: Develop concept for handling concurrency
#127: The option to represent dummies is only available in explorer (need a reopen when changed).
#128: Loading new attribute files, scenario is not refreshed.
#129: broken internal state after renaming slots
#130: slots containing arrays can not be renamed or edited in the Editor
#131: Connecting ports of TerminalNodes to internal ports gives a NullPointerException
#132: Absturz bei Modulgröße ändern
#133: Crash of the Java VM while using the ProMoT Explorer
#134: infrequent Null Pointer exception in edit details dialog shown for rename
#135: Export docu of logical model fails for complex gates
#143: No feedback when typing invalid transparency value
#144: GINY: In submodules arcs point to the wrong anchor of the target node
#149: clear parameters for module
#155: ProMot does not work with new Java version
#158: Error "illegal path" when the explorer is drawing using graphics2d
#159: problems in sbml import for multi-compartment models (22,90,161,162,163,164) from Biomodels
#160: Biologisch relevante Compounds in Explorer Statistik
#161: Extension of import format for attributes in explorer
#162: Flexible width of statusbox in Explorer
#163: Browser Menu doesn't close
#164: very slow reload on large models
#165: GUI access for properties "abstract" and "model"
#166: Printer for subclass/superclass viewer does not work
#167: Interference between multiple opened Visual Explorers
#168: Installation error
#169: No compund found - Error when exporting a modularized logical model
#170: Missing exception in GUI while exporting in directory without permission
#171: Variables flip_h and flip_v are exported to SBML
#172: flag for incomplete truth ignored in CNA-import
#173: uncatched NullPointerException in checker during layout after sbml import
#174: copy kb directories in build for mpi
#175: save path in form that is compatible across platforms
#176: Exception when using PFixedWidthStroke
#177: Editor: unlock of old class in "save as..." does not work .
#178: Drag&Drop: Visualizing of drop targets
#179: Fisheye zoom not considers edge handles
#180: Copy&Paste of TerminalNodes
#181: access on array elements in cond expressions does not work
#182: instantiate model as slot, root references are broken
#183: Diana installation
#184: Error at Promot 0.8.2 startup on openSUSE 11.1 and x86_64 arch.
#185: Error at Promot 0.8.2 startup on openSUSE 11.1 and x86_64 arch.
#186: crash report
#187: duplicated edges in copy and paste
#188: problem with kubuntu 9.10 64bit
#189: refactoring after rename or delete of TerminalNodes
#190: Doc preview when mouse over element
#191: bug in documentation export of complex classes in structure writer
#192: Bug - Edit->Set module size
#193: Problem with visualization of independent modules containg submodules
#194: Parameter "a" in a compound
#195: No scaling in Layout exported from VisualExplorer
#197: Position of text boxes for CNA export
#199: File chooser does not open, exception is thrown
#200: Import of Attributes doesn't work for simple names
#201: Transformation of terminal coordinates leads to changed geometry-position while opening the visual editor
#202: IDA error
#203: Improvement of dialog for "create links"
#204: Try to open the variable editor multiple times forces breaking of the GUI
#205: create graphics for module
#206: tooltip for nodes in editor doesn't always refresh
#207: focus listener for PromotDialog
#208: Checker: TerminalLinkFault
#209: specify another path for java in the promotenv-files for the non-plusdeps-version
#210: setname method for ModuleNode should not insert additional LinkNodes
#211: Editing o fparallel edges in Explorer
#212: CreateLinks command works only one time
#213: sbml import for reactions used in math introduces dummy parameters
#214: LinkProxy update with previous duplicated edges fails
#215: setName is applied to wrong node if focus is changed before pressing enter
#216: No positioning of edge nodes abfter "create links"
#217: update directory in complex dialogs
#222: Import CNA model uses outdated class for compounds
#223: GUI may hang when searching for class slot
#224: CNA-Import: inhibitory effect on two other species
#225: Drag&drop should be enabled _only_ with left mouse button.
#232: ProMoT crashes when opening a logical model in Visual Editor
#233: Length of menu entries
#234: Add functionality of vmin and vmax to ProMoT
#235: Remove lines of testing code
#236: Export logical model - extend "Use Generic Reaction Names" for reactions
#237: Add option for import graphml with flat or simple names