Opened 15 years ago

Last modified 14 years ago

#213 new defect

sbml import for reactions used in math introduces dummy parameters

Reported by: rempel Owned by: promot
Priority: major Milestone: Promot 0.9
Component: PromotSBML Version:
Severity: fatal Keywords:
Cc:

Description

in SBML reactions can be used in math. the expected value is then the rate for this reaction, defined by kinetic law. previously (before [9282]) after encountering a reaction id in math dummy parameters species and compartments were introduced. this is reduced to dummy parameters for the reaction rate (the math were these are used, will often not work).

TODO: use the reference to the rate (look up in define-rule most be fixed) instead of dummy parameters.

Change History (2)

comment:1 Changed 15 years ago by rempel

  • Component changed from PromotGuiBase to PromotSBML
  • Milestone set to Promot 0.9
  • Owner changed from promot to rempel

comment:2 Changed 14 years ago by rempel

  • Owner changed from rempel to promot

This concerns two Biomodels (tested up to model 251): BIOMD0000000245 and BIOMD0000000248.

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