#36 |
compact export of report files
|
Kostya
|
defect
|
trivial
|
|
DianaOptimizer
|
#132 |
Absturz bei Modulgröße ändern
|
rempel
|
defect
|
trivial
|
Promot 0.8.2
|
Promot
|
#203 |
Improvement of dialog for "create links"
|
promot
|
enhancement
|
trivial
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#225 |
Drag&drop should be enabled _only_ with left mouse button.
|
promot
|
defect
|
trivial
|
Promot 0.8.5
|
PromotGuiBrowser
|
#1 |
Matlab variable naming is not the same as in Diva
|
ginkel
|
defect
|
minor
|
|
PromotWriterMatlab
|
#5 |
Visual Scenarios: Rename scenario does not work
|
mirschel
|
enhancement
|
minor
|
|
PromotGuiVizNav
|
#6 |
Diva Start from Promot
|
ginkel
|
enhancement
|
minor
|
|
PromotKernel
|
#12 |
Incorrect diva variables
|
miha
|
defect
|
minor
|
Promot 0.8
|
PromotWriterDiana
|
#19 |
Fixing of NLPTask model
|
miha
|
defect
|
minor
|
|
DianaKernel
|
#20 |
Multilevel activity
|
ginkel
|
enhancement
|
minor
|
Promot 0.8
|
Promot
|
#22 |
DetailVisible attribute
|
ginkel
|
enhancement
|
minor
|
Promot 0.8
|
Promot
|
#26 |
Implement DianaSensDAESO
|
miha
|
enhancement
|
minor
|
Promot 0.8
|
DianaKernel
|
#29 |
Wrong data transmitted from python to diana with DianaParameter.SetValue function
|
miha
|
defect
|
minor
|
|
DianaKernel
|
#34 |
latex report file of optimizer can not be compiled
|
kostya
|
defect
|
minor
|
|
DianaOptimizer
|
#37 |
switching off online reporter of fit
|
Kostya
|
defect
|
minor
|
|
DianaOptimizer
|
#38 |
Popup menu has no "Output to Diana" item.
|
Martin
|
enhancement
|
minor
|
|
Promot
|
#39 |
placement of textboxes in CNA
|
mirschel
|
defect
|
minor
|
|
PromotGuiVizNav
|
#40 |
simultaneous coding of reservoirs and multiple levels
|
mirschel
|
defect
|
minor
|
|
PromotGuiVizNav
|
#49 |
GINY: arrows are not updated
|
mirschel
|
defect
|
minor
|
Promot 0.8.3
|
PromotGuiVizNav
|
#50 |
GINY: error in calculation of intersection of edge and rounded rectangle
|
mirschel
|
defect
|
minor
|
|
PromotGuiVizNav
|
#52 |
Using image export the tooltip will also be exported when main windows has focus not export dialog.
|
mirschel
|
defect
|
minor
|
|
PromotGuiVizNav
|
#53 |
Same calculators in Explorer are used in different scenarios
|
mirschel
|
defect
|
minor
|
Promot 0.8.2
|
PromotGuiVizNav
|
#57 |
Wrong scale factor of adapter elements in dynamic library
|
mirschel
|
defect
|
minor
|
|
PromotGuiVizNav
|
#58 |
Problem with the focus after selecting all the blocks.
|
ginkel
|
defect
|
minor
|
|
PromotGuiVizEdit
|
#61 |
Change canonical name to id
|
mirschel
|
defect
|
minor
|
|
PromotGuiVizNav
|
#62 |
Problems while navigating the search results
|
mirschel
|
defect
|
minor
|
Promot 0.8.1
|
PromotGuiVizNav
|
#64 |
Using reduced struct-library, logical network scenario fails
|
mirschel
|
defect
|
minor
|
|
PromotGuiVizNav
|
#77 |
SBML import Stuttgart defect
|
ginkel
|
defect
|
minor
|
|
Promot
|
#78 |
Apply scenario should be accessed more directly, not using 'Edit Scenarios'
|
mirschel
|
enhancement
|
minor
|
Promot 0.8.1
|
PromotGuiVizNav
|
#91 |
new variable for reactions (exclude in logical analysis) to export to cna
|
ginkel
|
task
|
minor
|
|
Promot
|
#110 |
add import dialog for parsed cna models
|
rempel
|
enhancement
|
minor
|
|
PromotGuiBrowser
|
#120 |
erroneous calculation of LinkNode positions in undo: Fit Module Size To Content
|
steinmet
|
defect
|
minor
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#127 |
The option to represent dummies is only available in explorer (need a reopen when changed).
|
mirschel
|
defect
|
minor
|
Promot 0.8.2
|
PromotGuiVizNav
|
#128 |
Loading new attribute files, scenario is not refreshed.
|
mirschel
|
defect
|
minor
|
Promot 0.8.3
|
PromotGuiVizNav
|
#134 |
infrequent Null Pointer exception in edit details dialog shown for rename
|
promot
|
defect
|
minor
|
Promot 0.8.3
|
Promot
|
#135 |
Export docu of logical model fails for complex gates
|
rempel
|
enhancement
|
minor
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#143 |
No feedback when typing invalid transparency value
|
mirschel
|
defect
|
minor
|
Promot 0.8.2
|
PromotGuiVizNav
|
#149 |
clear parameters for module
|
rempel
|
enhancement
|
minor
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#160 |
Biologisch relevante Compounds in Explorer Statistik
|
mirschel
|
enhancement
|
minor
|
Promot 0.8.2
|
PromotGuiVizNav
|
#162 |
Flexible width of statusbox in Explorer
|
mirschel
|
enhancement
|
minor
|
Promot 1.0
|
PromotGuiVizNav
|
#165 |
GUI access for properties "abstract" and "model"
|
rempel
|
enhancement
|
minor
|
Promot 0.8.2
|
PromotGuiBrowser
|
#171 |
Variables flip_h and flip_v are exported to SBML
|
kolczyk
|
enhancement
|
minor
|
Promot 0.8.3
|
Promot
|
#175 |
save path in form that is compatible across platforms
|
promot
|
enhancement
|
minor
|
|
PromotKernel
|
#194 |
Parameter "a" in a compound
|
promot
|
enhancement
|
minor
|
Promot 0.8.3
|
Promot
|
#195 |
No scaling in Layout exported from VisualExplorer
|
promot
|
defect
|
minor
|
Promot 0.8.3
|
PromotGuiVizNav
|
#197 |
Position of text boxes for CNA export
|
mirschel
|
enhancement
|
minor
|
Promot 0.8.3
|
PromotKernel
|
#200 |
Import of Attributes doesn't work for simple names
|
mirschel
|
enhancement
|
minor
|
Promot 0.8.3
|
PromotGuiVizNav
|
#201 |
Transformation of terminal coordinates leads to changed geometry-position while opening the visual editor
|
promot
|
task
|
minor
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#208 |
Checker: TerminalLinkFault
|
kolczyk
|
enhancement
|
minor
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#210 |
setname method for ModuleNode should not insert additional LinkNodes
|
promot
|
task
|
minor
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#235 |
Remove lines of testing code
|
promot
|
task
|
minor
|
Promot 0.8.5
|
PromotKernel
|
#2 |
SetVariables stores everything
|
ginkel
|
enhancement
|
major
|
|
PromotGuiBase
|
#3 |
SBML export fails with correct model
|
ginkel
|
defect
|
major
|
|
Promot
|
#4 |
Update of XML export for Diana
|
ginkel
|
task
|
major
|
Promot 0.8
|
Diana
|
#7 |
solve-one-index-range (equationset var to-solve) checks dependencies incorrectly
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotKernel
|
#8 |
Problems with differentiation in 3D Fuel Cell model
|
miha
|
defect
|
major
|
Promot 0.8
|
Promot
|
#9 |
Generation test models
|
miha
|
task
|
major
|
|
PromotWriterDiana
|
#10 |
Incorrect code generation in conditional expressions
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#11 |
Incorrect local sum indices
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#13 |
Incorrect GetSensitivityModel behaviour
|
miha
|
defect
|
major
|
Promot 0.8
|
DianaPython
|
#14 |
Fatal error after calling Common::Parameter::ICapeParameterSpec::Type()
|
miha
|
defect
|
major
|
|
DianaKernel
|
#15 |
Wrong java paths
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#16 |
Default values may contain algebraic loops after optimization
|
ginkel
|
defect
|
major
|
|
Promot
|
#17 |
Prohibit open models in diana writer
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#18 |
Icon options without GUI produces an error
|
ginkel
|
enhancement
|
major
|
Promot 0.8
|
PromotKernel
|
#21 |
Somehow
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#23 |
Input position
|
ginkel
|
enhancement
|
major
|
|
Promot
|
#24 |
unstability of promot visual editor
|
ginkel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#25 |
model documentation
|
ginkel
|
enhancement
|
major
|
|
Promot
|
#27 |
Alias name export for DianaModelData
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#28 |
Petri nets bug
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#30 |
Strange product warning
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotKernel
|
#31 |
Add mdl2diana version option
|
miha
|
enhancement
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#33 |
Reserve C++ reserved names in Diana code generation
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#41 |
SBML find constant species better
|
rempel
|
defect
|
major
|
|
PromotKernel
|
#42 |
SBML crash for specific parameters
|
ginkel
|
defect
|
major
|
|
Promot
|
#43 |
class cast exception while drag and drop of element from palette to editor pane
|
ginkel
|
defect
|
major
|
|
PromotGuiBase
|
#45 |
Changing focus after editing in variable table, the edit values are lost.
|
mirschel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#46 |
[6202] produces NullPointers
|
mirschel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#47 |
Area behaviour of Polylines
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotGuiVizEdit
|
#48 |
PVMAP sometimes contains 11-chars keys (state)
|
ginkel
|
defect
|
major
|
|
PromotKernel
|
#51 |
using the "t" time in matlab expressions fails.
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#54 |
Input line in ModelOutputDialog does not work, only the Chooser button works
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotGuiBase
|
#55 |
File Chooser does not work with java 1.5+
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#56 |
EPS (PDF) export does not work with hierarchical networks
|
mirschel
|
defect
|
major
|
|
PromotGuiVizNav
|
#59 |
Visual editor allows only small drawings
|
steinmet
|
enhancement
|
major
|
Promot 0.8
|
Promot
|
#63 |
Change properties of a global scenario is possible by leaving the set properties dialog open
|
mirschel
|
defect
|
major
|
|
PromotGuiVizNav
|
#65 |
Structure Library update
|
ginkel
|
defect
|
major
|
|
Promot
|
#66 |
Add new interface to DianaPetriNet/DianaDAESO
|
ginkel
|
enhancement
|
major
|
|
DianaKernel
|
#67 |
change-class of ModuleSlotProxy disconnects Propagation
|
ginkel
|
defect
|
major
|
|
Promot
|
#68 |
Model generation does not contain transition linkage
|
ginkel
|
defect
|
major
|
|
Promot
|
#69 |
XML reading should read petri linkage.
|
ginkel
|
defect
|
major
|
|
Promot
|
#70 |
defval attributes should be exported in metabolites to CNA
|
ginkel
|
enhancement
|
major
|
|
Promot
|
#71 |
Forking flag for Places
|
ginkel
|
defect
|
major
|
|
Promot
|
#72 |
Class changes do not change the moduleslotproxies
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#73 |
Implement Explicit Transitions in Petrinet
|
ginkel
|
defect
|
major
|
|
Promot
|
#74 |
diana translate expression does not translate :mod
|
ginkel
|
defect
|
major
|
|
Promot
|
#75 |
Strange delete behaviour
|
ginkel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#76 |
Slot-Class changing fails
|
ginkel
|
defect
|
major
|
|
Promot
|
#79 |
After source changes, netports keep garbage edges
|
ginkel
|
defect
|
major
|
|
PromotGuiBase
|