#126
|
new
|
fatal
|
blocker
|
promot
|
Sep 12, 2008
|
Develop concept for handling concurrency
|
#35
|
closed
|
fatal
|
critical
|
ginkel
|
Jul 26, 2006
|
Add GUI dialog for Diana
|
#44
|
closed
|
fatal
|
critical
|
ginkel
|
Sep 27, 2006
|
Open a file fails
|
#88
|
closed
|
bad
|
critical
|
ginkel
|
Jul 24, 2007
|
leave only one promot-config-build.lisp, no symlinks
|
#189
|
closed
|
fatal
|
critical
|
promot
|
Mar 12, 2010
|
refactoring after rename or delete of TerminalNodes
|
#2
|
closed
|
bad
|
major
|
ginkel
|
Jan 25, 2006
|
SetVariables stores everything
|
#3
|
closed
|
bad
|
major
|
ginkel
|
Jan 27, 2006
|
SBML export fails with correct model
|
#7
|
closed
|
fatal
|
major
|
ginkel
|
Feb 2, 2006
|
solve-one-index-range (equationset var to-solve) checks dependencies incorrectly
|
#8
|
closed
|
fatal
|
major
|
miha
|
Feb 6, 2006
|
Problems with differentiation in 3D Fuel Cell model
|
#15
|
closed
|
fatal
|
major
|
ginkel
|
Mar 1, 2006
|
Wrong java paths
|
#16
|
closed
|
bad
|
major
|
ginkel
|
Mar 1, 2006
|
Default values may contain algebraic loops after optimization
|
#17
|
closed
|
fatal
|
major
|
ginkel
|
Mar 3, 2006
|
Prohibit open models in diana writer
|
#18
|
closed
|
acceptable
|
major
|
ginkel
|
Mar 13, 2006
|
Icon options without GUI produces an error
|
#21
|
closed
|
bad
|
major
|
ginkel
|
Mar 22, 2006
|
Somehow
|
#23
|
closed
|
acceptable
|
major
|
ginkel
|
Mar 22, 2006
|
Input position
|
#25
|
closed
|
acceptable
|
major
|
ginkel
|
Mar 24, 2006
|
model documentation
|
#30
|
closed
|
bad
|
major
|
ginkel
|
Apr 18, 2006
|
Strange product warning
|
#41
|
closed
|
bad
|
major
|
rempel
|
Sep 22, 2006
|
SBML find constant species better
|
#42
|
closed
|
fatal
|
major
|
ginkel
|
Sep 22, 2006
|
SBML crash for specific parameters
|
#43
|
closed
|
bad
|
major
|
ginkel
|
Sep 27, 2006
|
class cast exception while drag and drop of element from palette to editor pane
|
#48
|
closed
|
bad
|
major
|
ginkel
|
Nov 2, 2006
|
PVMAP sometimes contains 11-chars keys (state)
|
#51
|
closed
|
bad
|
major
|
ginkel
|
Jan 8, 2007
|
using the "t" time in matlab expressions fails.
|
#54
|
closed
|
bad
|
major
|
ginkel
|
Feb 13, 2007
|
Input line in ModelOutputDialog does not work, only the Chooser button works
|
#55
|
closed
|
fatal
|
major
|
ginkel
|
Feb 16, 2007
|
File Chooser does not work with java 1.5+
|
#59
|
closed
|
fatal
|
major
|
steinmet
|
Mar 5, 2007
|
Visual editor allows only small drawings
|
#65
|
closed
|
fatal
|
major
|
ginkel
|
Apr 24, 2007
|
Structure Library update
|
#67
|
closed
|
fatal
|
major
|
ginkel
|
Apr 25, 2007
|
change-class of ModuleSlotProxy disconnects Propagation
|
#68
|
closed
|
fatal
|
major
|
ginkel
|
May 3, 2007
|
Model generation does not contain transition linkage
|
#69
|
closed
|
fatal
|
major
|
ginkel
|
May 3, 2007
|
XML reading should read petri linkage.
|
#70
|
closed
|
acceptable
|
major
|
ginkel
|
May 3, 2007
|
defval attributes should be exported in metabolites to CNA
|
#71
|
closed
|
fatal
|
major
|
ginkel
|
May 3, 2007
|
Forking flag for Places
|
#72
|
closed
|
fatal
|
major
|
ginkel
|
May 4, 2007
|
Class changes do not change the moduleslotproxies
|
#73
|
closed
|
fatal
|
major
|
ginkel
|
May 4, 2007
|
Implement Explicit Transitions in Petrinet
|
#74
|
closed
|
fatal
|
major
|
ginkel
|
May 15, 2007
|
diana translate expression does not translate :mod
|
#76
|
closed
|
fatal
|
major
|
ginkel
|
May 24, 2007
|
Slot-Class changing fails
|
#79
|
closed
|
fatal
|
major
|
ginkel
|
Jun 26, 2007
|
After source changes, netports keep garbage edges
|
#80
|
closed
|
fatal
|
major
|
ginkel
|
Jun 28, 2007
|
FDL forgets about weak slots
|
#81
|
closed
|
fatal
|
major
|
promot
|
Jul 4, 2007
|
model-names are too long when having indices
|
#82
|
closed
|
fatal
|
major
|
ginkel
|
Jul 4, 2007
|
Calculation of initial values does not work with indices in all levels
|
#84
|
closed
|
fatal
|
major
|
ginkel
|
Jul 23, 2007
|
When dropping classes from browser to constructionarea, the class does not appear in pallette
|
#85
|
closed
|
fatal
|
major
|
ginkel
|
Jul 23, 2007
|
Update of TerminalEdges after Class change undo fails, inner terminal has wrong id.
|
#86
|
closed
|
fatal
|
major
|
ginkel
|
Jul 24, 2007
|
Move lisp utilities to Promot directory (Win build)
|
#89
|
closed
|
acceptable
|
major
|
rempel
|
Jul 26, 2007
|
Store undo information in loadMdlFile
|
#90
|
closed
|
fatal
|
major
|
ginkel
|
Jul 26, 2007
|
CmdDelete Redo should have classnames for finding promottreenodes
|
#93
|
closed
|
fatal
|
major
|
ginkel
|
Aug 20, 2007
|
Link edges reappear after dispose
|
#94
|
closed
|
fatal
|
major
|
ginkel
|
Aug 20, 2007
|
add superclass in palettewindow does not work
|
#96
|
closed
|
fatal
|
major
|
promot
|
Sep 6, 2007
|
Adapters in logical models should be ignored in trace-not.
|
#97
|
closed
|
fatal
|
major
|
ginkel
|
Sep 11, 2007
|
Redirect promot binding to localhost
|
#98
|
closed
|
fatal
|
major
|
ginkel
|
Sep 12, 2007
|
Rewrite SignalHandler to shutdownHook
|
#100
|
closed
|
fatal
|
major
|
ginkel
|
Nov 22, 2007
|
getSlots() causes exception
|
#102
|
reopened
|
bad
|
major
|
promot
|
Jan 30, 2008
|
Update Math in Documentation.
|
#103
|
reopened
|
bad
|
major
|
promot
|
Jan 30, 2008
|
Add introduction to discrete modeling to documentation.
|
#106
|
closed
|
bad
|
major
|
ginkel
|
Apr 11, 2008
|
generate jacobian for diva export doesnt work -> remove option?
|
#115
|
closed
|
bad
|
major
|
rempel
|
Jul 22, 2008
|
restructure jars and used path to simplify installation (for non root)
|
#118
|
closed
|
bad
|
major
|
mirschel
|
Jul 28, 2008
|
Some hierarchical links are set not correctly in the HTML documentation
|
#123
|
new
|
fatal
|
major
|
promot
|
Aug 7, 2008
|
delete of set of PromotTreeNodes
|
#124
|
closed
|
bad
|
major
|
promot
|
Aug 12, 2008
|
configure scripts doesnt work with autoconf 2.62
|
#125
|
new
|
fatal
|
major
|
promot
|
Sep 12, 2008
|
improve test coverage
|
#129
|
closed
|
fatal
|
major
|
rempel
|
Oct 2, 2008
|
broken internal state after renaming slots
|
#155
|
closed
|
fatal
|
major
|
promot
|
Dec 31, 2008
|
ProMot does not work with new Java version
|
#166
|
closed
|
bad
|
major
|
promot
|
Apr 3, 2009
|
Printer for subclass/superclass viewer does not work
|
#168
|
closed
|
fatal
|
major
|
promot
|
May 18, 2009
|
Installation error
|
#169
|
closed
|
fatal
|
major
|
promot
|
Jun 9, 2009
|
No compund found - Error when exporting a modularized logical model
|
#172
|
closed
|
bad
|
major
|
promot
|
Jul 7, 2009
|
flag for incomplete truth ignored in CNA-import
|
#174
|
closed
|
fatal
|
major
|
promot
|
Jul 27, 2009
|
copy kb directories in build for mpi
|
#181
|
closed
|
fatal
|
major
|
rempel
|
Aug 12, 2009
|
access on array elements in cond expressions does not work
|
#184
|
closed
|
fatal
|
major
|
promot
|
Sep 29, 2009
|
Error at Promot 0.8.2 startup on openSUSE 11.1 and x86_64 arch.
|
#185
|
closed
|
fatal
|
major
|
promot
|
Sep 29, 2009
|
Error at Promot 0.8.2 startup on openSUSE 11.1 and x86_64 arch.
|
#188
|
closed
|
fatal
|
major
|
promot
|
Jan 5, 2010
|
problem with kubuntu 9.10 64bit
|
#191
|
closed
|
fatal
|
major
|
promot
|
Apr 6, 2010
|
bug in documentation export of complex classes in structure writer
|
#209
|
closed
|
bad
|
major
|
promot
|
Aug 20, 2010
|
specify another path for java in the promotenv-files for the non-plusdeps-version
|
#222
|
closed
|
bad
|
major
|
promot
|
Aug 18, 2011
|
Import CNA model uses outdated class for compounds
|
#233
|
closed
|
bad
|
major
|
mirschel
|
Apr 4, 2012
|
Length of menu entries
|
#234
|
new
|
acceptable
|
major
|
promot
|
May 3, 2012
|
Add functionality of vmin and vmax to ProMoT
|
#236
|
new
|
bad
|
major
|
promot
|
Oct 22, 2012
|
Export logical model - extend "Use Generic Reaction Names" for reactions
|
#6
|
closed
|
acceptable
|
minor
|
ginkel
|
Feb 1, 2006
|
Diva Start from Promot
|
#20
|
closed
|
acceptable
|
minor
|
ginkel
|
Mar 22, 2006
|
Multilevel activity
|
#22
|
closed
|
acceptable
|
minor
|
ginkel
|
Mar 22, 2006
|
DetailVisible attribute
|
#38
|
closed
|
fatal
|
minor
|
Martin
|
Aug 9, 2006
|
Popup menu has no "Output to Diana" item.
|
#77
|
closed
|
bad
|
minor
|
ginkel
|
May 31, 2007
|
SBML import Stuttgart defect
|
#91
|
closed
|
fatal
|
minor
|
ginkel
|
Jul 31, 2007
|
new variable for reactions (exclude in logical analysis) to export to cna
|
#107
|
new
|
bad
|
minor
|
promot
|
Apr 29, 2008
|
wrong variable index reported in algebraic loops
|
#134
|
closed
|
bad
|
minor
|
promot
|
Nov 10, 2008
|
infrequent Null Pointer exception in edit details dialog shown for rename
|
#171
|
closed
|
acceptable
|
minor
|
kolczyk
|
Jun 24, 2009
|
Variables flip_h and flip_v are exported to SBML
|
#175
|
closed
|
bad
|
minor
|
promot
|
Jul 28, 2009
|
save path in form that is compatible across platforms
|
#178
|
assigned
|
acceptable
|
minor
|
kolczyk
|
Aug 3, 2009
|
Drag&Drop: Visualizing of drop targets
|
#194
|
closed
|
acceptable
|
minor
|
promot
|
Jun 16, 2010
|
Parameter "a" in a compound
|
#197
|
closed
|
bad
|
minor
|
mirschel
|
Jun 30, 2010
|
Position of text boxes for CNA export
|
#205
|
new
|
acceptable
|
minor
|
promot
|
Aug 18, 2010
|
create graphics for module
|
#207
|
new
|
acceptable
|
minor
|
promot
|
Aug 18, 2010
|
focus listener for PromotDialog
|
#223
|
new
|
bad
|
minor
|
promot
|
Aug 18, 2011
|
GUI may hang when searching for class slot
|
#224
|
new
|
acceptable
|
minor
|
promot
|
Aug 18, 2011
|
CNA-Import: inhibitory effect on two other species
|
#235
|
closed
|
bad
|
minor
|
promot
|
May 3, 2012
|
Remove lines of testing code
|
#132
|
closed
|
fatal
|
trivial
|
rempel
|
Oct 10, 2008
|
Absturz bei Modulgröße ändern
|