| 1 | (define-module |
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| 2 | :class "toymodel" |
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| 3 | :super-classes ("struct-model")) |
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| 4 | |
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| 5 | |
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| 6 | (define-module |
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| 7 | :class "nucleus" |
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| 8 | :super-classes ("toymodel") |
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| 9 | :icon "../../SignalTransd/structure/icons/struct/nucleus.gif" |
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| 10 | :geometry-width "123" |
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| 11 | :geometry-height "332" |
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| 12 | :terminals |
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| 13 | (("input1" |
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| 14 | :is-eq-to "k3p1_k3p2_tf1.input1" |
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| 15 | :geometry-side "TOP" |
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| 16 | :geometry-position "0.101626016" |
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| 17 | :line nil) |
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| 18 | ("input2" |
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| 19 | :is-eq-to "k3p1_k3p2_tf1.input2" |
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| 20 | :geometry-side "TOP" |
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| 21 | :geometry-position "0.92276424")) |
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| 22 | :modules |
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| 23 | (("drain" |
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| 24 | :is-a "drain" |
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| 25 | :geometry-x "63" |
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| 26 | :geometry-y "282") |
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| 27 | ("k3p1_k3p2_tf1" |
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| 28 | :is-a "and-2" |
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| 29 | :geometry-x "63" |
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| 30 | :geometry-y "150") |
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| 31 | ("tf1_mmmm" |
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| 32 | :is-a "transfactor" |
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| 33 | :geometry-x "62" |
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| 34 | :geometry-y "218" |
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| 35 | :graphical-flip "00" |
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| 36 | :graphical-rotation "0")) |
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| 37 | :links |
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| 38 | (("k3p1_k3p2_tf1output_tf1_mmmminput" |
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| 39 | :terminals ("k3p1_k3p2_tf1.output" "tf1_mmmm.input" "drain.input") |
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| 40 | :nodes (("63" "210")) |
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| 41 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))))) |
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| 42 | |
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| 43 | |
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| 44 | (define-module |
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| 45 | :class "cell" |
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| 46 | :super-classes ("toymodel") |
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| 47 | :icon "../../SignalTransd/structure/icons/struct/cell.gif" |
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| 48 | :geometry-width "800" |
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| 49 | :geometry-height "900" |
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| 50 | :terminals |
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| 51 | (("input" |
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| 52 | :is-eq-to "struct_adapter_compound.input" |
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| 53 | :geometry-side "TOP" |
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| 54 | :geometry-position "0.335625") |
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| 55 | ("input0" |
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| 56 | :is-eq-to "struct_adapter_compound0.input" |
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| 57 | :geometry-side "TOP" |
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| 58 | :geometry-position "0.710625")) |
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| 59 | :modules |
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| 60 | (("a1_mmmmm" |
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| 61 | :is-a "adapter" |
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| 62 | :geometry-x "194" |
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| 63 | :geometry-y "344" |
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| 64 | :graphical-flip "00" |
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| 65 | :graphical-rotation "0") |
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| 66 | ("a1_not_ph1_k1" |
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| 67 | :is-a "somehow-2" |
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| 68 | :geometry-x "182" |
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| 69 | :geometry-y "425") |
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| 70 | ("a1_ph2" |
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| 71 | :is-a "activ" |
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| 72 | :geometry-x "691" |
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| 73 | :geometry-y "349") |
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| 74 | ("a2_iiiiiiiiiiiiiiiii" |
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| 75 | :is-a "adapter" |
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| 76 | :geometry-x "556" |
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| 77 | :geometry-y "412" |
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| 78 | :graphical-flip "00" |
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| 79 | :graphical-rotation "0") |
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| 80 | ("and_2_2" |
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| 81 | :is-a "and-2-2" |
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| 82 | :geometry-x "556" |
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| 83 | :geometry-y "496") |
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| 84 | ("k1_iiiiiiiiiiiiiiiiiiii" |
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| 85 | :is-a "kinase" |
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| 86 | :geometry-x "182" |
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| 87 | :geometry-y "493" |
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| 88 | :graphical-flip "00" |
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| 89 | :graphical-rotation "0") |
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| 90 | ("k1_k3r_k3p1" |
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| 91 | :is-a "and-2" |
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| 92 | :geometry-x "193" |
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| 93 | :geometry-y "560") |
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| 94 | ("k2_k3r_k3p2" |
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| 95 | :is-a "and-2" |
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| 96 | :geometry-x "544" |
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| 97 | :geometry-y "648") |
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| 98 | ("k2_mmmmmmm" |
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| 99 | :is-a "kinase" |
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| 100 | :geometry-x "556" |
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| 101 | :geometry-y "555" |
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| 102 | :graphical-flip "00" |
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| 103 | :graphical-rotation "0") |
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| 104 | ("k3p1" |
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| 105 | :is-a "kinase" |
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| 106 | :geometry-x "192" |
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| 107 | :geometry-y "608") |
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| 108 | ("k3p1_ph1" |
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| 109 | :is-a "activ" |
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| 110 | :geometry-x "126" |
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| 111 | :geometry-y "600" |
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| 112 | :graphical-rotation "90") |
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| 113 | ("k3p2" |
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| 114 | :is-a "kinase" |
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| 115 | :geometry-x "543" |
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| 116 | :geometry-y "714") |
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| 117 | ("k3r" |
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| 118 | :is-a "reservoir" |
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| 119 | :geometry-x "422" |
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| 120 | :geometry-y "645") |
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| 121 | ("not" |
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| 122 | :is-a "not" |
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| 123 | :geometry-x "269" |
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| 124 | :geometry-y "283") |
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| 125 | ("not0" |
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| 126 | :is-a "not" |
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| 127 | :geometry-x "74" |
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| 128 | :geometry-y "421" |
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| 129 | :graphical-rotation "180") |
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| 130 | ("not_r1_r2_a2" |
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| 131 | :is-a "and-2" |
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| 132 | :geometry-x "556" |
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| 133 | :geometry-y "301") |
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| 134 | ("nucleus_mmmmmmmm" |
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| 135 | :is-a "nucleus" |
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| 136 | :geometry-x "399" |
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| 137 | :geometry-y "780" |
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| 138 | :graphical-flip "00" |
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| 139 | :graphical-rotation "0") |
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| 140 | ("ph1" |
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| 141 | :is-a "phosphatase" |
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| 142 | :geometry-x "74" |
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| 143 | :geometry-y "606") |
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| 144 | ("ph2" |
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| 145 | :is-a "phosphatase" |
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| 146 | :geometry-x "691" |
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| 147 | :geometry-y "493") |
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| 148 | ("r1" |
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| 149 | :is-a "receptor" |
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| 150 | :geometry-x "268" |
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| 151 | :geometry-y "220" |
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| 152 | :graphical-flip "00" |
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| 153 | :graphical-rotation "0") |
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| 154 | ("r1_a1" |
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| 155 | :is-a "activ" |
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| 156 | :geometry-x "194" |
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| 157 | :geometry-y "220") |
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| 158 | ("r2" |
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| 159 | :is-a "receptor" |
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| 160 | :geometry-x "568" |
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| 161 | :geometry-y "226") |
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| 162 | ("source" |
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| 163 | :is-a "source" |
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| 164 | :geometry-x "422" |
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| 165 | :geometry-y "568" |
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| 166 | :graphical-flip "00" |
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| 167 | :graphical-rotation "0") |
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| 168 | ("struct_adapter_compound" |
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| 169 | :is-a "struct-adapter-compound" |
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| 170 | :geometry-x "268" |
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| 171 | :geometry-y "74") |
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| 172 | ("struct_adapter_compound0" |
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| 173 | :is-a "struct-adapter-compound" |
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| 174 | :geometry-x "568" |
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| 175 | :geometry-y "76")) |
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| 176 | :links |
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| 177 | (("a1_not_ph1_k1output_k1_iiiiiiiiiiiiiiiiiiiiinput" |
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| 178 | :terminals ("a1_not_ph1_k1.output" "k1_iiiiiiiiiiiiiiiiiiii.input" |
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| 179 | "k1_k3r_k3p1.input1" "and_2_2.input1") |
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| 180 | :nodes (("182" "485")) |
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| 181 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil))) |
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| 182 | ("a1_ph2output_ph2input" |
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| 183 | :terminals ("a1_ph2.output" "ph2.input" "and_2_2.input3") |
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| 184 | :nodes (("691" "485")) |
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| 185 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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| 186 | ("and_2_2output_k2_mmmmmmminput" |
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| 187 | :terminals ("and_2_2.output" "k2_mmmmmmm.input" |
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| 188 | "k2_k3r_k3p2.input2") |
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| 189 | :nodes (("556" "547")) |
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| 190 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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| 191 | ("k1_k3r_k3p1output_k3p1input" |
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| 192 | :terminals ("k1_k3r_k3p1.output" "k3p1.input" "k3p1_ph1.input1" |
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| 193 | "nucleus_mmmmmmmm.input1") |
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| 194 | :nodes (("192" "600")) |
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| 195 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) |
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| 196 | ("3" "-1" (("192" "736"))))) |
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| 197 | ("k2_k3r_k3p2output_k3p2input" |
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| 198 | :terminals ("k2_k3r_k3p2.output" "k3p2.input" |
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| 199 | "nucleus_mmmmmmmm.input2") |
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| 200 | :nodes (("544" "706")) |
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| 201 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" (("544" "736"))))) |
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| 202 | ("not0input_ph1input" |
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| 203 | :terminals ("not0.input" "ph1.input" "k3p1_ph1.output") |
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| 204 | :nodes (("74" "600")) |
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| 205 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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| 206 | ("not0output_a1_not_ph1_k1input1" |
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| 207 | :terminals ("not0.output" "a1_not_ph1_k1.input1") |
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| 208 | :edges (("0" "1" nil))) |
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| 209 | ("notoutput_not_r1_r2_a2input1" |
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| 210 | :terminals ("not.output" "not_r1_r2_a2.input1") |
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| 211 | :edges (("0" "1" nil))) |
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| 212 | ("not_r1_r2_a2output_a2_iiiiiiiiiiiiiiiiiinput" |
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| 213 | :terminals ("not_r1_r2_a2.output" "a2_iiiiiiiiiiiiiiiii.input" |
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| 214 | "and_2_2.input2") |
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| 215 | :nodes (("556" "404")) |
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| 216 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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| 217 | ("r1_a1output_a1_mmmmminput" |
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| 218 | :terminals ("r1_a1.output" "a1_mmmmm.input" "a1_ph2.input1" |
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| 219 | "a1_not_ph1_k1.input2") |
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| 220 | :nodes (("194" "340")) |
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| 221 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil))) |
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| 222 | ("sourceoutput_k3rinput" |
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| 223 | :terminals ("source.output" "k3r.input" "k1_k3r_k3p1.input2" |
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| 224 | "k2_k3r_k3p2.input1") |
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| 225 | :nodes (("422" "637")) |
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| 226 | :edges (("0" "-1" nil) ("1" "-1" nil) |
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| 227 | ("2" "-1" (("355" "549") ("355" "637"))) ("3" "-1" nil))) |
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| 228 | ("struct_adapter_compound0output_r2input" |
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| 229 | :terminals ("struct_adapter_compound0.output" "r2.input" |
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| 230 | "not_r1_r2_a2.input2") |
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| 231 | :nodes (("568" "217")) |
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| 232 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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| 233 | ("struct_adapter_compoundoutput_r1input" |
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| 234 | :terminals ("struct_adapter_compound.output" "r1.input" |
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| 235 | "r1_a1.input1" "not.input") |
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| 236 | :nodes (("268" "211")) |
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| 237 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil))))) |
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| 238 | |
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| 239 | |
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| 240 | (define-module |
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| 241 | :class "whole_model" |
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| 242 | :super-classes ("toymodel") |
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| 243 | :properties |
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| 244 | (("model" |
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| 245 | :value "yes")) |
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| 246 | :geometry-width "320" |
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| 247 | :geometry-height "433" |
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| 248 | :modules |
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| 249 | (("cell" |
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| 250 | :is-a "cell" |
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| 251 | :geometry-x "155" |
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| 252 | :geometry-y "262") |
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| 253 | ("lig1" |
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| 254 | :is-a "source" |
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| 255 | :geometry-x "122" |
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| 256 | :geometry-y "132") |
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| 257 | ("lig2" |
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| 258 | :is-a "source" |
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| 259 | :geometry-x "197" |
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| 260 | :geometry-y "132")) |
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| 261 | :links |
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| 262 | (("lig1output_cellinput" |
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| 263 | :terminals ("lig1.output" "cell.input") |
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| 264 | :edges (("0" "1" nil))) |
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| 265 | ("lig2output_cellinput0" |
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| 266 | :terminals ("lig2.output" "cell.input0") |
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| 267 | :edges (("0" "1" nil))))) |
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| 268 | |
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| 269 | |
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