(define-module
  :class "toymodel"
  :super-classes ("struct-model"))


(define-module
  :class "nucleus"
  :super-classes ("toymodel")
  :icon "../../SignalTransd/structure/icons/struct/nucleus.gif"
  :geometry-width "123"
  :geometry-height "332"
  :terminals
  (("input1"
    :is-eq-to "k3p1_k3p2_tf1.input1"
    :geometry-side "TOP"
    :geometry-position "0.101626016"
    :line nil)
   ("input2"
    :is-eq-to "k3p1_k3p2_tf1.input2"
    :geometry-side "TOP"
    :geometry-position "0.92276424"))
  :modules
  (("drain"
    :is-a "drain"
    :geometry-x "63"
    :geometry-y "282")
   ("k3p1_k3p2_tf1"
    :is-a "and-2"
    :geometry-x "63"
    :geometry-y "150")
   ("tf1_mmmm"
    :is-a "transfactor"
    :geometry-x "62"
    :geometry-y "218"
    :graphical-flip "00"
    :graphical-rotation "0"))
  :links
  (("k3p1_k3p2_tf1output_tf1_mmmminput"
    :terminals ("k3p1_k3p2_tf1.output" "tf1_mmmm.input" "drain.input")
    :nodes (("63" "210"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))))


(define-module
  :class "cell"
  :super-classes ("toymodel")
  :icon "../../SignalTransd/structure/icons/struct/cell.gif"
  :geometry-width "800"
  :geometry-height "900"
  :terminals
  (("input"
    :is-eq-to "struct_adapter_compound.input"
    :geometry-side "TOP"
    :geometry-position "0.335625")
   ("input0"
    :is-eq-to "struct_adapter_compound0.input"
    :geometry-side "TOP"
    :geometry-position "0.710625"))
  :modules
  (("a1_mmmmm"
    :is-a "adapter"
    :geometry-x "194"
    :geometry-y "344"
    :graphical-flip "00"
    :graphical-rotation "0")
   ("a1_not_ph1_k1"
    :is-a "somehow-2"
    :geometry-x "182"
    :geometry-y "425")
   ("a1_ph2"
    :is-a "activ"
    :geometry-x "691"
    :geometry-y "349")
   ("a2_iiiiiiiiiiiiiiiii"
    :is-a "adapter"
    :geometry-x "556"
    :geometry-y "412"
    :graphical-flip "00"
    :graphical-rotation "0")
   ("and_2_2"
    :is-a "and-2-2"
    :geometry-x "556"
    :geometry-y "496")
   ("k1_iiiiiiiiiiiiiiiiiiii"
    :is-a "kinase"
    :geometry-x "182"
    :geometry-y "493"
    :graphical-flip "00"
    :graphical-rotation "0")
   ("k1_k3r_k3p1"
    :is-a "and-2"
    :geometry-x "193"
    :geometry-y "560")
   ("k2_k3r_k3p2"
    :is-a "and-2"
    :geometry-x "544"
    :geometry-y "648")
   ("k2_mmmmmmm"
    :is-a "kinase"
    :geometry-x "556"
    :geometry-y "555"
    :graphical-flip "00"
    :graphical-rotation "0")
   ("k3p1"
    :is-a "kinase"
    :geometry-x "192"
    :geometry-y "608")
   ("k3p1_ph1"
    :is-a "activ"
    :geometry-x "126"
    :geometry-y "600"
    :graphical-rotation "90")
   ("k3p2"
    :is-a "kinase"
    :geometry-x "543"
    :geometry-y "714")
   ("k3r"
    :is-a "reservoir"
    :geometry-x "422"
    :geometry-y "645")
   ("not"
    :is-a "not"
    :geometry-x "269"
    :geometry-y "283")
   ("not0"
    :is-a "not"
    :geometry-x "74"
    :geometry-y "421"
    :graphical-rotation "180")
   ("not_r1_r2_a2"
    :is-a "and-2"
    :geometry-x "556"
    :geometry-y "301")
   ("nucleus_mmmmmmmm"
    :is-a "nucleus"
    :geometry-x "399"
    :geometry-y "780"
    :graphical-flip "00"
    :graphical-rotation "0")
   ("ph1"
    :is-a "phosphatase"
    :geometry-x "74"
    :geometry-y "606")
   ("ph2"
    :is-a "phosphatase"
    :geometry-x "691"
    :geometry-y "493")
   ("r1"
    :is-a "receptor"
    :geometry-x "268"
    :geometry-y "220"
    :graphical-flip "00"
    :graphical-rotation "0")
   ("r1_a1"
    :is-a "activ"
    :geometry-x "194"
    :geometry-y "220")
   ("r2"
    :is-a "receptor"
    :geometry-x "568"
    :geometry-y "226")
   ("source"
    :is-a "source"
    :geometry-x "422"
    :geometry-y "568"
    :graphical-flip "00"
    :graphical-rotation "0")
   ("struct_adapter_compound"
    :is-a "struct-adapter-compound"
    :geometry-x "268"
    :geometry-y "74")
   ("struct_adapter_compound0"
    :is-a "struct-adapter-compound"
    :geometry-x "568"
    :geometry-y "76"))
  :links
  (("a1_not_ph1_k1output_k1_iiiiiiiiiiiiiiiiiiiiinput"
    :terminals ("a1_not_ph1_k1.output" "k1_iiiiiiiiiiiiiiiiiiii.input"
                "k1_k3r_k3p1.input1" "and_2_2.input1")
    :nodes (("182" "485"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil)))
   ("a1_ph2output_ph2input"
    :terminals ("a1_ph2.output" "ph2.input" "and_2_2.input3")
    :nodes (("691" "485"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))
   ("and_2_2output_k2_mmmmmmminput"
    :terminals ("and_2_2.output" "k2_mmmmmmm.input"
                "k2_k3r_k3p2.input2")
    :nodes (("556" "547"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))
   ("k1_k3r_k3p1output_k3p1input"
    :terminals ("k1_k3r_k3p1.output" "k3p1.input" "k3p1_ph1.input1"
                "nucleus_mmmmmmmm.input1")
    :nodes (("192" "600"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)
            ("3" "-1" (("192" "736")))))
   ("k2_k3r_k3p2output_k3p2input"
    :terminals ("k2_k3r_k3p2.output" "k3p2.input"
                "nucleus_mmmmmmmm.input2")
    :nodes (("544" "706"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" (("544" "736")))))
   ("not0input_ph1input"
    :terminals ("not0.input" "ph1.input" "k3p1_ph1.output")
    :nodes (("74" "600"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))
   ("not0output_a1_not_ph1_k1input1"
    :terminals ("not0.output" "a1_not_ph1_k1.input1")
    :edges (("0" "1" nil)))
   ("notoutput_not_r1_r2_a2input1"
    :terminals ("not.output" "not_r1_r2_a2.input1")
    :edges (("0" "1" nil)))
   ("not_r1_r2_a2output_a2_iiiiiiiiiiiiiiiiiinput"
    :terminals ("not_r1_r2_a2.output" "a2_iiiiiiiiiiiiiiiii.input"
                "and_2_2.input2")
    :nodes (("556" "404"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))
   ("r1_a1output_a1_mmmmminput"
    :terminals ("r1_a1.output" "a1_mmmmm.input" "a1_ph2.input1"
                "a1_not_ph1_k1.input2")
    :nodes (("194" "340"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil)))
   ("sourceoutput_k3rinput"
    :terminals ("source.output" "k3r.input" "k1_k3r_k3p1.input2"
                "k2_k3r_k3p2.input1")
    :nodes (("422" "637"))
    :edges (("0" "-1" nil) ("1" "-1" nil)
            ("2" "-1" (("355" "549") ("355" "637"))) ("3" "-1" nil)))
   ("struct_adapter_compound0output_r2input"
    :terminals ("struct_adapter_compound0.output" "r2.input"
                "not_r1_r2_a2.input2")
    :nodes (("568" "217"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))
   ("struct_adapter_compoundoutput_r1input"
    :terminals ("struct_adapter_compound.output" "r1.input"
                "r1_a1.input1" "not.input")
    :nodes (("268" "211"))
    :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil)))))


(define-module
  :class "whole_model"
  :super-classes ("toymodel")
  :properties
  (("model"
    :value "yes"))
  :geometry-width "320"
  :geometry-height "433"
  :modules
  (("cell"
    :is-a "cell"
    :geometry-x "155"
    :geometry-y "262")
   ("lig1"
    :is-a "source"
    :geometry-x "122"
    :geometry-y "132")
   ("lig2"
    :is-a "source"
    :geometry-x "197"
    :geometry-y "132"))
  :links
  (("lig1output_cellinput"
    :terminals ("lig1.output" "cell.input")
    :edges (("0" "1" nil)))
   ("lig2output_cellinput0"
    :terminals ("lig2.output" "cell.input0")
    :edges (("0" "1" nil)))))