| | 1 | = Visualization of the stoichiometric model of the hepatocyte = |
| | 2 | |
| | 3 | This is a cooperation project in the platform modeling of the HepatoSys initiative. Participating groups are the people from Berlin (Holzhuetter) and Magdeburg (Klamt). |
| | 4 | The goal is the visualization of the stoichiometric model of the hepatocyte metabolism. This model is maintained in the Berlin group. |
| | 5 | |
| | 6 | == Steps in the workflow == |
| | 7 | |
| | 8 | 1. Import of the model (SBML import functionality, File > Imort > Import SBML) |
| | 9 | 1. Apply initial layout using the ProMoT Editor |
| | 10 | 1. Open model in the ProMoT Explorer |
| | 11 | 1. Export the network model (GraphML export functionality, Model > Export > Export Layout) |
| | 12 | 1. Apply layout using an external tool, e.g. [http://www.yworks.com/products/yed/ yEd], [http://www.cs.bilkent.edu.tr/~ivis/chisio.html Chisio] |
| | 13 | 1. Import new layout information (GraphML import functionality, Model > Import > Import Layout) |
| | 14 | |
| | 15 | == Use cases == |
