ProMoT Visual Explorer Detailed Tests

Setup A: applies to tests: 4, 5, 6, 11, 12-15, 22-25, 26-27
Start ProMoT server and GUI -> load the logical library Promot/trunk/promot/kb/SignalTransd/structure/struct-ana-library.mdl​ -> load the logical toymodel from tutorial Promot/trunk/promot/kb/SignalTransd/structure/toymodel_tutorial/LOAD_toymodel.mdl​ -> Open the Visual Explorer for the browser tree node "struct-model" --> "toymodel" --> "whole_model" by right mouse click --> context menu --> Visual Explorer.

Setup B: applies to tests: -20
Start ProMoT server and GUI -> load Promot/trunk/promot/kb/practical-bio/LOAD.mdl​ which includes the library (reduced-library) for dynamic modeling -> Open the Visual Explorer for the browser tree node "dynamic-model" --> "mapk_modules" --> "mapkc" by right mouse click --> context menu --> Visual Explorer.

Setup C: applies to tests:
Start ProMoT server and GUI -> import a biomodels.org model (e.g. BIOMD0000000001.xml) -> Open the Visual Explorer for the browser tree node "sbml-model" --> model by right mouse click --> context menu --> Visual Explorer.

Setup D: applies to tests:
Start ProMoT server and GUI -> import a biomodels.org model -> Open the Visual Explorer for the browser tree node "sbml-model" --> "mapk_modules" --> "mapkc" by right mouse click --> context menu --> Visual Explorer.

JUnit Tests

1. Import node and edge attributes
   Promot/trunk/promot/src/gui/org/mpg/dcts/promot/viznav.data.io.AttributeReaderTest.java
   Promot/trunk/promot/src/gui/org/mpg/dcts/promot/viznav.data.io.DelimitedTextReaderTest.java
   Check that two files (edge attributes, node attributes) are loaded properly. The attributes should be mapped to the existing nodes and edges in the graph correctly.

2. Load global scenarios
   Promot/trunk/promot/src/gui/org/mpg/dcts/promot/viznav/visual/VisualPropertyTest.java
   Check that the global scenario file (.PromotVizScenarios) is at the given location and calculators are loaded properly from the file.

3. Scenarios: Logical Network Parser
   Promot/trunk/promot/src/gui/org/mpg/dcts/promot/viznav/data/logical/LogicalNetworkParserTest.java
   Check that part of the logical network parser, especially parsing of DUMMY element and NOT element.

Tests

4. Import/export layout
   

5. Export graphics
   

6. Export logical model
   

7. Edit scenario: new/copy/rename/remove/mappings
   

8. Save scenarios (to USER_HOME)
   

9. Load local scenarios
   

10. Exit with/without dialog
    

Visual inspection

11. Orthogonal layout
    Apply an orthogonal layout to the network, all edges represented by polylines (not straight lines) must be drawn in an orthogonal style.

12. Grid layer on/off
    A grid overlaying the entire canvas should appear/disappear by switching option on/off.

13. Squiggle layer on/off
    With option on and pressed left mouse button, a line is drawn, release mouse button should stop drawing, drawings can be switched on/off.

14. Status layer on/off
    With option on, a text box appears in the left lower corner showing the name of the current scenario (default: Logical Scenario) and the current navigation mode (default: Hierarchy Zoom), display can be switched on/off.

15. Overview layer on/off
    With option on, a overview window of the entire canvas appears in the left lower corner, can be switched on/off

16. Legend layer on/off/correct mappings
    

17. Navigation mode: Interactive Zoom
    Select navigation mode 'Interactive Zoom', in status layer the current mode should be 'Interactive Zoom',

18. Navigation mode: Hierarchy Zoom
    

19. Navigation mode: Fisheye Zoom
    

20. Navigation mode: Focus Zoom
    

21. Editing mode: Editing (move/resize all/resize border/edit edge handles)
    

22. Show (all) icons on/off
    With option on, all icons are shown also for complex modules, can be toggled on/off

23. Show (all) details on/off
    With option off, the content (nodes, edges, icons, labels) disappears, can be toggled on/off

24. Show (all) labels on/off
    With option off, labels of all nodes (also in hierarchy) disappear, can be toggled on/off

25. Show (all) label boxes on/off
    With option on, all label boxes of nodes (also in hierarchy) are drawn, option is disabled if (24) is off, can be toggled on/off

26. Edge: Go to source
    Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'k3p1' and compound 'ph1', choose 'Go To Source' from context menu (automatic zoom to compound 'k3p1'), compound 'k3p1' should be enlarged.

27. Edge: Go to target
    Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'k3p1' and compound 'ph1', choose 'Go To Target' from context menu (automatic zoom to compound 'ph1'), compound 'ph1' should be enlarged.

28. Search for node/edge in network
    Search for the compound 'r2' (attribute == PromotName, Case sensitive == on, Display options == Highlight, Navigation Options == Hierarchy Zoom), click button 'Search', compound 'r2' is emphasized by 'Global Highlight Node Color' (default red color) applied on the node border, display should zoom to compound 'r2', click button 'Clear' should remove the string input in the dialog and the highlight border color.

29. Check model type
    Check the correct interpretation of the loaded model.
    Using Setup A, a logical model should be loaded, in 'Statistics' the model type should be 'Logical Model', default scenario should be 'Logical Network'.
    Using Setup B, a dynamical model should be loaded, in 'Statistics' the model type should be 'Dynamical Model', default scenario should be 'Visual Editor'.
    Using Setup C, a SBML model should be loaded, in 'Statistics' the model type should be 'SBML Model', default scenario should be 'SBML Model'.
    Using Setup D, a unknown model type should be loaded, in 'Statistics' the model type should be 'Unknown Model', default scenario should be 'Visual Editor'.

Not tested/not critical/trivial

30. Statistics dialog