Changes between Version 30 and Version 31 of PromotExplorerTest

Timestamp:

Aug 23, 2010, 3:20:41 PM (15 years ago)

Author:

mirschel

Comment:

--

PromotExplorerTest

@@ -3 +3 @@
 '''Setup A: ''' [[BR]]
 Model type: 'Logical Model'. [[BR]]
-Test to be applied: 1-6, 7, 8, 9, 10, 11, 12-16, 17-21, 22-25, 26-27, 28, 29, 30 [[BR]] 
-Start ProMoT server and GUI -> load the logical library [source:/Promot/trunk/promot/kb/SignalTransd/structure/struct-ana-library.mdl]
--> load the logical toymodel from tutorial [source:/Promot/trunk/promot/kb/SignalTransd/structure/toymodel_tutorial/LOAD_toymodel.mdl] 
--> Open the Visual Explorer for the browser tree node 'struct-model' --> 'toymodel' --> 'whole_model' by right mouse click --> context menu --> Visual Explorer.
+Test to be applied: 1-6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19-23, 24-29, 30-33, 34-36, 37, 38 [[BR]] 
+Start ProMoT server and GUI -> open logical library (Open --> Logical Library); load the logical toymodel from tutorial [source:/Promot/trunk/promot/kb/SignalTransd/structure/toymodel_tutorial/LOAD_toymodel.mdl] 
+; open the Visual Explorer for the browser tree node 'struct-model' --> 'toymodel' --> 'whole_model' by right mouse click --> context menu --> Visual Explorer.
 
 '''Setup B: ''' [[BR]]
 Model type: 'Dynamical Model'. [[BR]]
-Tests to be applied: 2, 5, 8, 9, 10, 29[[BR]]
+Tests to be applied: 9, 38 [[BR]]
 Start ProMoT server and GUI -> load [source:/Promot/trunk/promot/kb/practical-bio/LOAD.mdl] which includes the library (reduced-library) for dynamic modeling 
 -> Open the Visual Explorer for the browser tree node 'dynamic-model' --> 'mapk_modules' --> 'mapkc' by right mouse click --> context menu --> Visual Explorer.
@@ -16 +15 @@
 '''Setup C: ''' [[BR]]
 Model type: 'SBML Model'. [[BR]]
-Tests to be applied: 2, 5, 8, 9, 10, 29 [[BR]]
+Tests to be applied: 9, 38 [[BR]]
 Start ProMoT server and GUI -> import a biomodels.org model (e.g. BIOMD0000000001.xml) 
 -> Open the Visual Explorer for the browser tree node 'sbml-model' --> 'name of model' by right mouse click --> context menu --> Visual Explorer.
@@ -22 +21 @@
 '''Setup D: ''' [[BR]]
 Model type: 'Unknown Model'. [[BR]]
-Tests to be applied: 2, 5, 8, 9, 10, 29 [[BR]]
+Tests to be applied: 9, 38 [[BR]]
 Start ProMoT server and GUI -> load [source:/Promot/trunk/promot/kb/practical/LOAD.mdl] which loads the 'tank' model -> Open the Visual Explorer for the browser tree node 'tank-plant' --> 'mc-tank-plant' by right mouse click --> context menu --> Visual Explorer.
 
@@ -42 +41 @@
 === Tests ===
 
- 7. Import/export layout [[BR]] Save layout (Model --> Export --> Export Layout) in a file (e.g. layout.graphml) in your home directory, change editing mode to 'Editing', move the compounds 'lig1' and 'ph2' slightly, move the edge handle of inhibition edge '!r1-->not_r1_r2_a2' slightly, import layout (Model --> Import --> Import Layout) from a file (e.g. layout.graphml). The positions of the compounds 'lig1' and 'ph2' and edge handle of inhibition edge '!r1-->not_r1_r2_a2' should be the same as before. [[BR]] --> TODO: use JUnit test. [[BR]][[BR]]
- 8. Import/export attributes [[BR]] Save node attribute 'Map Number' (Model --> Export --> Export Attributes) in a file (e.g. node_attrs.txt) in your home directory, edit file node_attrs.txt by changing in the first line 'Map Number' to 'Test' and in the second line '1' to '5', import attribute file (Model --> Import --> Import Attributes). Copy the 'Logical Network Scenario' and for 'Node Fill Color' set the map attribute to 'Test'. Two row should appear showing the values '1' and '5'. Now set for value '1' a blue color, for value '5' a red color. The node 'k1' in the module 'cell' should be colored red, all other nodes should colored blue [[BR]] --> TODO: use JUnit test.[[BR]][[BR]]
- 9. Export graphics [[BR]] Open export dialog (Model --> Export --> Export Graphics), a dialog should appear with six options for formats (eps, ps, svg, emf, png, gif), export the view with each of the formats using default options. The results should look like the view in the Visual Explorer but without any layers (status, overview, grid). [[BR]][[BR]]
+ 7. Import/export layout [[BR]] Save layout (Model --> Export --> Export Layout) in a file (e.g. cell.graphml) in your home directory, change editing mode to 'Editing', move the compounds 'lig1' and 'ph2' slightly, move the edge handle of inhibition edge '!r1-->not_r1_r2_a2' slightly, import layout (Model --> Import --> Import Layout) from a file (e.g. cell.graphml). The positions of the compounds 'lig1' and 'ph2' and edge handle of inhibition edge '!r1-->not_r1_r2_a2' should be the same as before. [[BR]] --> TODO: use JUnit test. [[BR]][[BR]]
+ 8. Import/export attributes [[BR]] Save node attribute 'Map Number' (Model --> Export --> Export Attributes) in a file (e.g. node_attrs.txt) in your home directory, edit file node_attrs.txt by changing in the first line 'Map Number' to 'Test' and in the second line from '1' to '5', import attribute file (Model --> Import --> Import Attributes). Copy the 'Logical Network Scenario' and for 'Node Fill Color' set the map attribute to 'Test'. Two rows should are listed showing the values '1' and '5'. Now set for value '1' a blue color, for value '5' a red color. The node 'k1' in the module 'cell' should be colored red, all other nodes should colored blue [[BR]] --> TODO: use JUnit test.[[BR]][[BR]]
+ 9. Export graphics [[BR]] Open export dialog (Model --> Export --> Export Graphics), a dialog should appear with six options for formats (eps, ps, svg, emf, png, gif), export the view with each of the formats using default options. The results should look like the view in the Visual Explorer but without any layers (status, overview or grid). [[BR]][[BR]]
  10. Export logical model [[BR]] Output logical model with default options, click button 'Generate Model', export should perform without errors, check resulting files, click button 'Close' should exit the dialog. [[BR]] -->  TODO: use JUnit test. [[BR]][[BR]]
  11. Edit scenarios, new/copy/rename/remove mappings. [[BR]][[BR]]
- 12. Load user-defined (local) scenarios [[BR]] Load user-defined scenarios from USER_HOME. Check console output. Two cases:
+ 12. Load user-defined (local) scenarios [[BR]] User-defined scenarios should be loaded from USER_HOME; check console output when starting Visual Explorer; two cases:
    a. No file '.!PromotVizScenarios' in USER_HOME. When open the Visual Explorer a default scenario 'Default (Editable)' is created. Check 'Edit Scenarios'-dialog (Edit --> Edit Scenario...). 
    b. File '.!PromotVizScenarios' in USER_HOME exists. Check 'Edit Scenarios'-dialog (Edit --> Edit Scenario...). In the dialog local scenarios (indicated in the name by a prefixed [L]) have to be present. [[BR]][[BR]]