Changes between Version 28 and Version 29 of PromotExplorerTest


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Timestamp:
Aug 23, 2010, 8:39:01 AM (15 years ago)
Author:
mirschel
Comment:

--

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  • PromotExplorerTest

    v28 v29  
    5151   b. File '.!PromotVizScenarios' in USER_HOME exists. Check 'Edit Scenarios'-dialog (Edit --> Edit Scenario...). In the dialog local scenarios (indicated in the name by a prefixed [L]) have to be present. [[BR]][[BR]]
    5252 13. Save user-defined (local) scenarios (to USER_HOME) [[BR]] Save user-defined scenarios to USER_HOME. Check console output. Check file '.!PromotVizScenarios' in the USER_HOME of existence and correct time stamp.[[BR]][[BR]]
    53  14. Exit with/without dialog [[BR]] Closing the visual explorer requires to check the local scenarios. If the initial local scenarios are equal to the current local scenarios (no changes) the Visual Explorer exit promptly. If the initial local scenarios are not equal to the current local scenarios (changes are made during exploration) a dialog is opened in order to make sure the user really wants to save the local scenarios (options: Save, Discard, Close). Button 'Save' saves the scenarios as described in (13), button 'Discard' just close the dialog, button 'Close' exits the Visual Explorer with no saving. [[BR]][[BR]]
     53 14. Exit with/without dialog [[BR]] Closing the visual explorer requires to check the local scenarios. If the initial local scenarios are equal to the current local scenarios (no changes) the Visual Explorer exit promptly. If the initial local scenarios are not equal to the current local scenarios (changes are made during exploration) a dialog is opened in order to make sure the user really wants to save the local scenarios (options: Save, Discard, Close). Button 'Save' saves the scenarios as described in (13), button 'Discard' just close the dialog, button 'Close' exits the Visual Explorer with no saving.
    5454
    5555=== Visual inspection ===
    5656
    57  15. Orthogonal layout [[BR]] Apply an orthogonal layout to the network (Edit --> Layout --> Orthogonal Layout), all edges represented by polylines (not straight lines) must be drawn in an orthogonal style. [[BR]][[BR]]
    58  16. Flat layout [[BR]] Apply a flat layout to the network (Edit --> Layout --> Flat Layout), all basic compounds are scaled to the same size (compare compounds in different modules, e.g. 'k1' in cell and 'tf1' in nucleus). [[BR]][[BR]]
    59  17. Adjust node width [[BR]] Call action (Edit --> Layout --> Extend Node Width To Label), all nodes with really long labels should adjust their width to the label length. [[BR]][[BR]]
    60  18. Grid layer on/off [[BR]] A grid overlaying the entire canvas should appear/disappear by switching option on/off. [[BR]][[BR]]
    61  19. Squiggle layer on/off [[BR]] With option on and pressed left mouse button, a line is drawn, release mouse button should stop drawing, drawings can be switched on/off. [[BR]][[BR]]
    62  20. Status layer on/off [[BR]] With option on, a text box appears in the right lower corner showing the name of the current scenario (default: Logical Scenario) and the current navigation mode (default: Hierarchy Zoom), display can be switched on/off. [[BR]][[BR]]
    63  21. Overview layer on/off [[BR]] With option on, a overview window of the entire canvas appears in the right lower corner, can be switched on/off. [[BR]][[BR]]
    64  22. Legend layer for Visual Scenarios on/off/correct mappings [[BR]] A window should appear showing the mappings used in the current visual scenario. Press the button 'Close' to exit the dialog, can be switched on/off. [[BR]][[BR]]
    65  23. Navigation mode: Interactive Zoom [[BR]] Select navigation mode 'Interactive Zoom', in the status layer the current mode should be entitled 'Interactive Zoom':
     57 15. Export GraphML (yEd style) [[BR]] Select export option (Model --> Export --> Export GraphML (yEd style). Save the network in a file. Open yEd and load file. Compare both networks in Visual Explorer and yEd. They should have the same visual appereance. [[BR]][[BR]]
     58 16. Orthogonal layout [[BR]] Apply an orthogonal layout to the network (Edit --> Layout --> Orthogonal Layout), all edges represented by polylines (not straight lines) must be drawn in an orthogonal style. [[BR]][[BR]]
     59 17. Flat layout [[BR]] Apply a flat layout to the network (Edit --> Layout --> Flat Layout), all basic compounds are scaled to the same size (compare compounds in different modules, e.g. 'k1' in cell and 'tf1' in nucleus). [[BR]][[BR]]
     60 18. Adjust node width [[BR]] Call action (Edit --> Layout --> Extend Node Width To Label), all nodes with really long labels should adjust their width to the label length. [[BR]][[BR]]
     61 19. Grid layer on/off [[BR]] A grid overlaying the entire canvas should appear/disappear by switching option on/off. [[BR]][[BR]]
     62 20. Squiggle layer on/off [[BR]] With option on and pressed left mouse button, a line is drawn, release mouse button should stop drawing, drawings can be switched on/off. [[BR]][[BR]]
     63 21. Status layer on/off [[BR]] With option on, a text box appears in the right lower corner showing the name of the current scenario (default: Logical Scenario) and the current navigation mode (default: Hierarchy Zoom), display can be switched on/off. [[BR]][[BR]]
     64 22. Overview layer on/off [[BR]] With option on, a overview window of the entire canvas appears in the right lower corner, can be switched on/off. [[BR]][[BR]]
     65 23. Legend for visual scenarios on/off/correct mappings [[BR]] Select legend in the menu (View --> Legend). A window should appear showing the mappings used in the current visual scenario. Press the button 'Close' to exit the dialog, can be switched on/off. [[BR]][[BR]]
     66 24. Navigation mode: Interactive Zoom [[BR]] Select navigation mode 'Interactive Zoom', in the status layer the current mode should be entitled 'Interactive Zoom':
    6667  * hold down left button + drag right should zoom into the network
    6768  * hold down left button + drag left should zoom out of the network
    6869  * hold down left button + ctrl + drag should move (pan) the entire network. [[BR]][[BR]]
    69  24. Navigation mode: Hierarchy Zoom [[BR]] Select navigation mode 'Hierarchy Zoom', in the status layer the current mode should be entitled 'Hierarchy Zoom':
     70 25. Navigation mode: Hierarchy Zoom [[BR]] Select navigation mode 'Hierarchy Zoom', in the status layer the current mode should be entitled 'Hierarchy Zoom':
    7071  * click left button on node/edge should zoom to focused node/edge in hierarchical steps
    7172  * click left button + shift should zoom out the whole network to fit on screen
    7273  * hold down left button + ctrl + drag should move (pan) the entire network. [[BR]][[BR]]
    73  25. Navigation mode: Fisheye Zoom [[BR]] Select navigation mode 'Fisheye Zoom', in the status layer the current mode should be entitled 'Fisheye Zoom':
     74 26. Navigation mode: Fisheye Zoom [[BR]] Select navigation mode 'Fisheye Zoom', in the status layer the current mode should be entitled 'Fisheye Zoom':
    7475  * click left button on node should enlarge node and shrink all other visible nodes
    7576  * click left button on entity + shift should shrink node and enlarge all other visible nodes
    7677  * if in the tab 'Navigation' under options the box 'Consider Edges' is checked, also edges should be considered during Fisheye Zoom (edges move according nodes)
    7778  * hold down left button + ctrl + drag should move (pan) the entire network. [[BR]][[BR]]
    78  26. Navigation mode: Focus Zoom [[BR]] Select navigation mode 'Focus Zoom', in the status layer the current mode should be entitled 'Focus Zoom':
     79 27. Navigation mode: Focus Zoom [[BR]] Select navigation mode 'Focus Zoom', in the status layer the current mode should be entitled 'Focus Zoom':
    7980  * click left button on entity should perform a minimal zoom to focused entity
    8081  * hold down left button + ctrl + drag should move (pan) the entire network. [[BR]][[BR]]
    81  27. Editing mode: Editing (move/resize all/resize border/edit edge handles) [[BR]]  Select navigation mode 'Editing', in the status layer the current mode should be entitled 'Editing':
     82 28. Editing mode: Editing (move/resize all/resize border/edit edge handles) [[BR]]  Select navigation mode 'Editing', in the status layer the current mode should be entitled 'Editing':
    8283  * click left button on node + drag should move the node inside bounds of parent node
    8384  * click left button on node handle + drag should resize all components of node
    … …  
    8889  * click right button on edge for context menu --> Remove all edge handles should delete all edge handles on the link
    8990  * hold down left button + ctrl + drag should move (pan) the entire network. [[BR]][[BR]]
    90  28. Show (all) icons on/off [[BR]] With option on, all icons are shown also for complex modules, can be toggled on/off. [[BR]][[BR]]
    91  29. Show (all) details on/off [[BR]] With option off, the content (nodes, edges, icons, labels) disappears, can be toggled on/off. [[BR]][[BR]]
    92  30. Show (all) labels on/off [[BR]] With option off, labels of all nodes (also in hierarchy) disappear, can be toggled on/off. [[BR]][[BR]]
    93  31. Show (all) label boxes on/off [[BR]] With option on, all label boxes of nodes (also in hierarchy) are drawn, option is disabled if (24) is off, can be toggled on/off. [[BR]][[BR]]
    94  32. Edge: Zoom to Source [[BR]] Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'k3p1' and compound 'ph1', choose 'Zoom To Source' from context menu (automatic zoom to compound 'k3p1'), compound 'k3p1' should be enlarged. [[BR]][[BR]]
    95  33. Edge: Zoom to Target [[BR]] Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'k3p1' and compound 'ph1', choose 'Zoom To Target' from context menu (automatic zoom to compound 'ph1'), compound 'ph1' should be enlarged.  [[BR]][[BR]]
    96  34. Edge: Zoom along Edge [[BR]] Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'a1' and compound 'ph2', choose 'Zoom along Edge' from context menu (automatic zoom to compound 'a1' followed by moving the view along the path in the edge direction until compound 'ph2' is reached), compound 'ph2' should be enlarged.  [[BR]][[BR]]
    97  35. Search for node/edge in network [[BR]] Search for the compound '!r2' (attribute == !PromotName, Case sensitive == on, Display options == Highlight, Navigation Options == Hierarchy Zoom), click button 'Search', compound '!r2' is emphasized by 'Global Highlight Node Color' (default red color) applied on the node border, display should zoom to compound '!r2', click button 'Clear' should remove the string input in the dialog and the highlight border color. [[BR]]
     91 29. Legend for navigation and editing modes [[BR]] Select legend in the menu (Mode --> Legend). A window should appear showing detailed information about the supported modes and their functionality. Press the button 'Close' to exit the dialog. [[BR]][[BR]]
     92 30. Show (all) icons on/off [[BR]] With option on, all icons are shown also for complex modules, can be toggled on/off. [[BR]][[BR]]
     93 31. Show (all) details on/off [[BR]] With option off, the content (nodes, edges, icons, labels) disappears, can be toggled on/off. [[BR]][[BR]]
     94 32. Show (all) labels on/off [[BR]] With option off, labels of all nodes (also in hierarchy) disappear, can be toggled on/off. [[BR]][[BR]]
     95 33. Show (all) label boxes on/off [[BR]] With option on, all label boxes of nodes (also in hierarchy) are drawn, option is disabled if (24) is off, can be toggled on/off. [[BR]][[BR]]
     96 34. Edge: Zoom to Source [[BR]] Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'k3p1' and compound 'ph1', choose 'Zoom To Source' from context menu (automatic zoom to compound 'k3p1'), compound 'k3p1' should be enlarged. [[BR]][[BR]]
     97 35. Edge: Zoom to Target [[BR]] Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'k3p1' and compound 'ph1', choose 'Zoom To Target' from context menu (automatic zoom to compound 'ph1'), compound 'ph1' should be enlarged.  [[BR]][[BR]]
     98 36. Edge: Zoom along Edge [[BR]] Choose navigation mode 'Hierarchy Zoom', click on compound 'cell' (automatic zoom to compound 'cell'), right click on reaction edge between compound 'a1' and compound 'ph2', choose 'Zoom along Edge' from context menu (automatic zoom to compound 'a1' followed by moving the view along the path in the edge direction until compound 'ph2' is reached), compound 'ph2' should be enlarged.  [[BR]][[BR]]
     99 37. Search for node/edge in network [[BR]] Search for the compound '!r2' (attribute == !PromotName, Case sensitive == on, Display options == Highlight, Navigation Options == Hierarchy Zoom), click button 'Search', compound '!r2' is emphasized by 'Global Highlight Node Color' (default red color) applied on the node border, display should zoom to compound '!r2', click button 'Clear' should remove the string input in the dialog and the highlight border color. [[BR]]
    98100  Search for the edges with interaction type 'inhibition' (attribute == !InteractionType, Case sensitive == off, Display options == Highlight, Navigation Options == None), click button 'Search', edges 'ph1-->a1_not_ph1_k1' and '!r1-->not_r1_r2_a2' are emphasized by 'Global Highlight Edge Color' (default red color) applied on the edge color, no zoom should be applied, click button 'Clear' should remove the string input in the dialog and the highlight border color. [[BR]][[BR]]
    99  36. Check model type [[BR]] Check the correct interpretation of the loaded model. Four cases:[[BR]]
     101 38. Check model type [[BR]] Check the correct interpretation of the loaded model. Four cases:[[BR]]
    100102   a. Using Setup A, a logical model should be loaded, in the 'Statistics' dialog the model type should be 'Logical Model', default scenario should be 'Logical Network'.
    101103   b. Using Setup B, a dynamical model should be loaded, in the 'Statistics' dialog the model type should be 'Dynamical Model', default scenario should be 'Visual Editor'.
    … …  
    105107=== Not tested / not critical / trivial ===
    106108
    107  37. Statistics dialog [[BR]][[BR]]
    108  38. Options (General, Rendering, Navigation, Scenarios) [[BR]][[BR]]
    109  39. Legend for modes [[BR]][[BR]]
    110  40. LOD of nodes, edges and text labels
     109 39. Statistics dialog [[BR]][[BR]]
     110 40. Options (General, Rendering, Navigation, Scenarios) [[BR]][[BR]]
     111 41. LOD of nodes, edges and text labels