Changes between Version 2 and Version 3 of PromotBrowserTest0.8.4

Timestamp:

Aug 18, 2011, 5:15:30 PM (14 years ago)

Author:

danker

Comment:

--

PromotBrowserTest0.8.4

@@ -30 +30 @@
  10. '''Tree nodes of logical model:''' load ''logical library'' and ''toy model'' ([source:/Promot/trunk/promot/kb/SignalTransd/structure/toymodel.mdl]); check contents of model in browser tree. Success if ''struct-library'', ''struct-model'', and ''toy-model'' are present.
  12. '''Saving a model (selection/all):''' load ''egf model''; save the model into mdl (selected classes, all classes), check that the generated mdl files contain (only) the selected classes
- 13. '''Export to SBML''': load egf model, export the model to SBML, check generated file for completeness and correctness
- 14. '''Export to Diana/Diva''': load egf model; export the model to Diana/Diva; check the generated files for completeness and correctness
+ 13. '''Export to SBML:''' load egf model, export the model to SBML, check generated file for completeness and correctness
+ 14. '''Export to Diana/Diva:''' load egf model; export the model to Diana/Diva; check the generated files for completeness and correctness
+ 15. '''Run Script:''' open ''Run Script'' dialog (File --> Run Script); set ''Generation Directory'', choose ''Script File'' ([source:/Promot/trunk/promot/kb/scripts/synthetic-biology/terminator_gen.pl]) and ''Input File'' ([source:/Promot/trunk/promot/kb/scripts/synthetic-biology/terminator.inp]), press ''Generate Model'', check that generated mdl file can be loaded into ProMoT
  16. '''Changing properties in browser:''' select module, right-click for context menu, choose Change Property; check that changing the icon, ''abstract'' and ''model'' properties work as expected by looking at the source code (enable Show QuickView) and the color of the tree icon
  17. '''Simulation with Diana:''' load Hafke model ([source:/Promot/trunk/promot/kb/hafke/obertopp/LOAD.mdl]), select ''hafke-process'' (module --> device --> process), open simulation dialog from menu (Tools --> Simulate Model), check for diana app (see status in output log), edit the generation directory to '~/opertopp', click on 'Advanced...' in the solver options pane (new window with several options should appear), close options dialog, click on 'Simulate Model' button (simulation result should appear after a while, several text in output log), click on 'Edit Script' button (text editor should appear with python script), edit the script (e.g. set Tend to 60.0), save, simulate again (tend should be 60.0 now), click on 'reset' button (files in directories 'model', 'script' and 'results' should be removed, status in output log, 'Edit Script' button should be disabled).