Changes between Initial Version and Version 1 of ExceptionsDuringTest


Ignore:
Timestamp:
Jul 28, 2009, 11:20:07 AM (16 years ago)
Author:
rempel
Comment:

--

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  • ExceptionsDuringTest

    v1 v1  
     1Exception at start of PromotUI (during batch sbml import using GUI/current libsbml):
     2
     3Exception in thread "AWT-EventQueue-0" java.lang.ClassCastException
     4        at javax.swing.LayoutComparator.compare(LayoutComparator.java:61)
     5        at java.util.Arrays.mergeSort(Arrays.java:1270)
     6        at java.util.Arrays.mergeSort(Arrays.java:1282)
     7        at java.util.Arrays.mergeSort(Arrays.java:1281)
     8        at java.util.Arrays.sort(Arrays.java:1210)
     9        at java.util.Collections.sort(Collections.java:159)
     10        at
     11javax.swing.SortingFocusTraversalPolicy.enumerateAndSortCycle(SortingFocusTraversalPolicy.java:119)
     12
     13        at
     14javax.swing.SortingFocusTraversalPolicy.getFirstComponent(SortingFocusTraversalPolicy.java:434)
     15
     16        at
     17javax.swing.LayoutFocusTraversalPolicy.getFirstComponent(LayoutFocusTraversalPolicy.java:148)
     18
     19        at
     20javax.swing.SortingFocusTraversalPolicy.getDefaultComponent(SortingFocusTraversalPolicy.java:511)
     21
     22        at
     23java.awt.FocusTraversalPolicy.getInitialComponent(FocusTraversalPolicy.java:152)
     24        at
     25java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:334)
     26
     27        at java.awt.Component.dispatchEventImpl(Component.java:4282)
     28        at java.awt.Container.dispatchEventImpl(Container.java:2116)
     29        at java.awt.Window.dispatchEventImpl(Window.java:2429)
     30        at java.awt.Component.dispatchEvent(Component.java:4240)
     31        at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
     32        at java.awt.SequencedEvent.dispatch(SequencedEvent.java:98)
     33        at java.awt.EventQueue.dispatchEvent(EventQueue.java:597)
     34        at
     35java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:273)
     36
     37        at
     38java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:183)
     39        at
     40java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:173)
     41
     42        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:168)
     43        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:160)
     44        at java.awt.EventDispatchThread.run(EventDispatchThread.java:121)
     45
     46scheinbar ist ein parent (window), wahrscheinlich promotUI noch null, die
     47einzige moegliche alternative waere ein parent frame der nicht von window
     48abgeleitet ist (kommt meines wissens nach in promot nicht vor).
     49
     50NullPointerException in Checker after previous errors/exceptions
     51not a problem originating in the checker but improved error handling would improve overall stability
     52
     53sbml import + layout (not reproduceable)
     54  filename: /data/bio/werkzeuge/SBMLeditor-1.3.3/data/release_16June2009_sbmls/curated/BIOMD0000000161.xml
     55 
     56  wahrscheinlich node null node.getName results in exLisp that node not present (disposed?), vermeidbar in CheckerNode.java
     57 
     58  Exception in thread "Checker" java.lang.NullPointerException
     59        at org.mpg.dcts.promot.vizedit.graph.InfoVariables.getVariableInfo(InfoVariables.java:62)
     60        at org.mpg.dcts.promot.vizedit.checker.CheckerNode.checkDefaultValuesDynamic(CheckerNode.java:304)
     61        at org.mpg.dcts.promot.vizedit.checker.CheckerNode.check(CheckerNode.java:98)
     62        at org.mpg.dcts.promot.vizedit.checker.ModuleGraphCheckController$1.run(ModuleGraphCheckController.java:146)
     63 
     64 sbml import + layout (reproduzierbar, anzahl variiert)
     65  filename: /data/bio/werkzeuge/SBMLeditor-1.3.3/data/release_16June2009_sbmls/curated/BIOMD0000000175.xml
     66 
     67  exception, during layout of compartment, danach terminals alle rechte untere ecke     
     68Exception in thread "AWT-EventQueue-0" java.util.NoSuchElementException: Vector Enumeration
     69        at java.util.Vector$1.nextElement(Vector.java:305)
     70        at org.tigris.gef.base.SelectionManager.paint(SelectionManager.java:242)
     71        at org.tigris.gef.base.Editor.paint(Editor.java:440)
     72        at org.tigris.gef.graph.presentation.JGraphInternalPane.paintComponent(JGraphInternalPane.java:29)
     73        at javax.swing.JComponent.paint(JComponent.java:1022)
     74        at javax.swing.JComponent.paintToOffscreen(JComponent.java:5104)
     75        at javax.swing.BufferStrategyPaintManager.paint(BufferStrategyPaintManager.java:285)
     76        at javax.swing.RepaintManager.paint(RepaintManager.java:1132)
     77        at javax.swing.JComponent._paintImmediately(JComponent.java:5052)
     78        at javax.swing.JComponent.paintImmediately(JComponent.java:4862)
     79        at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:727)
     80        at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:683)
     81        at javax.swing.RepaintManager.seqPaintDirtyRegions(RepaintManager.java:663)
     82        at javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run(SystemEventQueueUtilities.java:128)
     83        at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
     84        at java.awt.EventQueue.dispatchEvent(EventQueue.java:597)
     85        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:273)
     86        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:183)
     87        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:173)
     88        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:168)
     89        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:160)
     90        at java.awt.EventDispatchThread.run(EventDispatchThread.java:121)
     91
     92 sbml import + layout           (tritt schlecht reproduzierbar bei verschiedenen modellen auf)
     93          filename: /data/bio/werkzeuge/SBMLeditor-1.3.3/data/release_16June2009_sbmls/curated/BIOMD0000000201.xml
     94          terminals in compartment hauptsaechlich in rechter unterer ecke
     95       
     96        Exception in thread "AWT-EventQueue-0" java.util.NoSuchElementException: Vector Enumeration
     97        at java.util.Vector$1.nextElement(Vector.java:305)
     98        at org.tigris.gef.base.LayerDiagram.paintContents(LayerDiagram.java:210)
     99        at org.tigris.gef.base.Layer.paint(Layer.java:261)
     100        at org.tigris.gef.base.LayerManager.paint(LayerManager.java:143)
     101        at org.tigris.gef.base.LayerManager.paint(LayerManager.java:135)
     102        at org.tigris.gef.base.Editor.paint(Editor.java:439)
     103        at org.tigris.gef.graph.presentation.JGraphInternalPane.paintComponent(JGraphInternalPane.java:29)
     104        at javax.swing.JComponent.paint(JComponent.java:1022)
     105        at javax.swing.JComponent.paintToOffscreen(JComponent.java:5104)
     106        at javax.swing.BufferStrategyPaintManager.paint(BufferStrategyPaintManager.java:285)
     107        at javax.swing.RepaintManager.paint(RepaintManager.java:1132)
     108        at javax.swing.JComponent._paintImmediately(JComponent.java:5052)
     109        at javax.swing.JComponent.paintImmediately(JComponent.java:4862)
     110        at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:727)
     111        at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:683)
     112        at javax.swing.RepaintManager.seqPaintDirtyRegions(RepaintManager.java:663)
     113        at javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run(SystemEventQueueUtilities.java:128)
     114        at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
     115        at java.awt.EventQueue.dispatchEvent(EventQueue.java:597)
     116        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:273)
     117        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:183)
     118        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:173)
     119        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:168)
     120        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:160)
     121        at java.awt.EventDispatchThread.run(EventDispatchThread.java:121)
     122       
     123