Opened 13 years ago

Last modified 13 years ago

#236 new task

Export logical model - extend "Use Generic Reaction Names" for reactions — at Initial Version

Reported by: kolczyk Owned by: promot
Priority: major Milestone: Promot 0.9
Component: Promot Version: 0.8.3
Severity: bad Keywords:
Cc:

Description

In the export dialog for logical models an option "Use Generic Reaction Names" is provided. If a label (:LABEL) is provided for the gates and the box is not checked, the String specified as label is used as reaction name for CNA. This label is only present if the model has been imported from cna format previously. If no label is specified, the status of check-box has no influence on the exported model (The reaction name is composed from the names of connected compounds and describes the equation, e.g. a+b=c). If no label is specified and the box is not checked the module-name of the gate should be taken. This name would be preserved throughout the working cycle (export log model - changing the model in CNA - import the model into ProMoT) and enables the reuse of a graphml file of the original model.

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