#35 |
Add GUI dialog for Diana
|
ginkel
|
enhancement
|
critical
|
Promot 0.8
|
Promot
|
#44 |
Open a file fails
|
ginkel
|
defect
|
critical
|
|
PromotGuiBase
|
#60 |
two visual scenarios with the same name forces exception
|
mirschel
|
defect
|
critical
|
Promot 0.8.2
|
PromotGuiVizNav
|
#88 |
leave only one promot-config-build.lisp, no symlinks
|
ginkel
|
defect
|
critical
|
Promot 0.8
|
Promot
|
#164 |
very slow reload on large models
|
promot
|
defect
|
critical
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#167 |
Interference between multiple opened Visual Explorers
|
mirschel
|
defect
|
critical
|
Promot 0.8.2
|
PromotGuiVizNav
|
#189 |
refactoring after rename or delete of TerminalNodes
|
promot
|
task
|
critical
|
Promot 0.8.3
|
PromotGuiBase
|
#2 |
SetVariables stores everything
|
ginkel
|
enhancement
|
major
|
|
PromotGuiBase
|
#3 |
SBML export fails with correct model
|
ginkel
|
defect
|
major
|
|
Promot
|
#4 |
Update of XML export for Diana
|
ginkel
|
task
|
major
|
Promot 0.8
|
Diana
|
#7 |
solve-one-index-range (equationset var to-solve) checks dependencies incorrectly
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotKernel
|
#8 |
Problems with differentiation in 3D Fuel Cell model
|
miha
|
defect
|
major
|
Promot 0.8
|
Promot
|
#9 |
Generation test models
|
miha
|
task
|
major
|
|
PromotWriterDiana
|
#10 |
Incorrect code generation in conditional expressions
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#11 |
Incorrect local sum indices
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#13 |
Incorrect GetSensitivityModel behaviour
|
miha
|
defect
|
major
|
Promot 0.8
|
DianaPython
|
#15 |
Wrong java paths
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#17 |
Prohibit open models in diana writer
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#18 |
Icon options without GUI produces an error
|
ginkel
|
enhancement
|
major
|
Promot 0.8
|
PromotKernel
|
#21 |
Somehow
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#25 |
model documentation
|
ginkel
|
enhancement
|
major
|
|
Promot
|
#27 |
Alias name export for DianaModelData
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#28 |
Petri nets bug
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#30 |
Strange product warning
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotKernel
|
#31 |
Add mdl2diana version option
|
miha
|
enhancement
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#33 |
Reserve C++ reserved names in Diana code generation
|
miha
|
defect
|
major
|
Promot 0.8
|
PromotWriterDiana
|
#42 |
SBML crash for specific parameters
|
ginkel
|
defect
|
major
|
|
Promot
|
#43 |
class cast exception while drag and drop of element from palette to editor pane
|
ginkel
|
defect
|
major
|
|
PromotGuiBase
|
#45 |
Changing focus after editing in variable table, the edit values are lost.
|
mirschel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#46 |
[6202] produces NullPointers
|
mirschel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#47 |
Area behaviour of Polylines
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotGuiVizEdit
|
#51 |
using the "t" time in matlab expressions fails.
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#54 |
Input line in ModelOutputDialog does not work, only the Chooser button works
|
ginkel
|
defect
|
major
|
Promot 0.8
|
PromotGuiBase
|
#55 |
File Chooser does not work with java 1.5+
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#56 |
EPS (PDF) export does not work with hierarchical networks
|
mirschel
|
defect
|
major
|
|
PromotGuiVizNav
|
#59 |
Visual editor allows only small drawings
|
steinmet
|
enhancement
|
major
|
Promot 0.8
|
Promot
|
#65 |
Structure Library update
|
ginkel
|
defect
|
major
|
|
Promot
|
#66 |
Add new interface to DianaPetriNet/DianaDAESO
|
ginkel
|
enhancement
|
major
|
|
DianaKernel
|
#67 |
change-class of ModuleSlotProxy disconnects Propagation
|
ginkel
|
defect
|
major
|
|
Promot
|
#68 |
Model generation does not contain transition linkage
|
ginkel
|
defect
|
major
|
|
Promot
|
#69 |
XML reading should read petri linkage.
|
ginkel
|
defect
|
major
|
|
Promot
|
#70 |
defval attributes should be exported in metabolites to CNA
|
ginkel
|
enhancement
|
major
|
|
Promot
|
#71 |
Forking flag for Places
|
ginkel
|
defect
|
major
|
|
Promot
|
#72 |
Class changes do not change the moduleslotproxies
|
ginkel
|
defect
|
major
|
Promot 0.8
|
Promot
|
#73 |
Implement Explicit Transitions in Petrinet
|
ginkel
|
defect
|
major
|
|
Promot
|
#74 |
diana translate expression does not translate :mod
|
ginkel
|
defect
|
major
|
|
Promot
|
#75 |
Strange delete behaviour
|
ginkel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#76 |
Slot-Class changing fails
|
ginkel
|
defect
|
major
|
|
Promot
|
#79 |
After source changes, netports keep garbage edges
|
ginkel
|
defect
|
major
|
|
PromotGuiBase
|
#80 |
FDL forgets about weak slots
|
ginkel
|
defect
|
major
|
|
Promot
|
#84 |
When dropping classes from browser to constructionarea, the class does not appear in pallette
|
ginkel
|
defect
|
major
|
|
Promot
|
#85 |
Update of TerminalEdges after Class change undo fails, inner terminal has wrong id.
|
ginkel
|
defect
|
major
|
|
Promot
|
#87 |
Linkproxy update from source
|
ginkel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#89 |
Store undo information in loadMdlFile
|
rempel
|
defect
|
major
|
Promot 0.8.2
|
Promot
|
#90 |
CmdDelete Redo should have classnames for finding promottreenodes
|
ginkel
|
defect
|
major
|
|
Promot
|
#92 |
Mapping for given attribute is erroneously not supported
|
mirschel
|
defect
|
major
|
|
PromotGuiVizNav
|
#93 |
Link edges reappear after dispose
|
ginkel
|
defect
|
major
|
|
Promot
|
#94 |
add superclass in palettewindow does not work
|
ginkel
|
defect
|
major
|
|
Promot
|
#95 |
remove default values not possible
|
mirschel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#98 |
Rewrite SignalHandler to shutdownHook
|
ginkel
|
defect
|
major
|
|
PromotGuiBase
|
#99 |
Close "Set Scenario Properties"- dialog when changing from local to global scenario
|
mirschel
|
defect
|
major
|
|
PromotGuiVizNav
|
#100 |
getSlots() causes exception
|
ginkel
|
defect
|
major
|
|
Promot
|
#101 |
confirming of delete-action for a promot-class
|
steinmet
|
enhancement
|
major
|
Promot 0.8.1
|
PromotGuiBrowser
|
#104 |
renaming of connected elements in the visual editor fails
|
steinmet
|
defect
|
major
|
Promot 0.8.1
|
PromotGuiVizEdit
|
#105 |
mehrere compounds an einem linknode fuehren im visual explorer zu ueberfluessigen kanten
|
mirschel
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizNav
|
#106 |
generate jacobian for diva export doesnt work -> remove option?
|
ginkel
|
defect
|
major
|
|
Promot
|
#113 |
priorities for check results
|
steinmet
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#114 |
setting gif icon should be possible via gui
|
steinmet
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiBrowser
|
#115 |
restructure jars and used path to simplify installation (for non root)
|
rempel
|
defect
|
major
|
Promot 0.8.1
|
Promot
|
#116 |
tracking saved/modified status of classes
|
rempel
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiBrowser
|
#117 |
Different handling in function "Export to logical model"
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#118 |
Some hierarchical links are set not correctly in the HTML documentation
|
mirschel
|
defect
|
major
|
Promot 0.8.2
|
Promot
|
#119 |
attempted deletion of superclass-slots in visual editing should give a feedback..
|
steinmet
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#122 |
feedback for checker status
|
steinmet
|
task
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#130 |
slots containing arrays can not be renamed or edited in the Editor
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#131 |
Connecting ports of TerminalNodes to internal ports gives a NullPointerException
|
steinmet
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#144 |
GINY: In submodules arcs point to the wrong anchor of the target node
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#158 |
Error "illegal path" when the explorer is drawing using graphics2d
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#159 |
problems in sbml import for multi-compartment models (22,90,161,162,163,164) from Biomodels
|
rempel
|
defect
|
major
|
Promot 0.8.2
|
PromotSBML
|
#168 |
Installation error
|
promot
|
defect
|
major
|
|
PromotGuiBase
|
#169 |
No compund found - Error when exporting a modularized logical model
|
promot
|
defect
|
major
|
Promot 0.8.2
|
Promot
|
#170 |
Missing exception in GUI while exporting in directory without permission
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiBrowser
|
#172 |
flag for incomplete truth ignored in CNA-import
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiBase
|
#173 |
uncatched NullPointerException in checker during layout after sbml import
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#174 |
copy kb directories in build for mpi
|
promot
|
defect
|
major
|
|
Promot
|
#176 |
Exception when using PFixedWidthStroke
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#177 |
Editor: unlock of old class in "save as..." does not work .
|
kolczyk
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#179 |
Fisheye zoom not considers edge handles
|
promot
|
enhancement
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#180 |
Copy&Paste of TerminalNodes
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#181 |
access on array elements in cond expressions does not work
|
rempel
|
defect
|
major
|
Promot 0.8.3
|
PromotKernel
|
#183 |
Diana installation
|
miha
|
defect
|
major
|
|
Diana
|
#185 |
Error at Promot 0.8.2 startup on openSUSE 11.1 and x86_64 arch.
|
promot
|
defect
|
major
|
|
Promot
|
#186 |
crash report
|
promot
|
defect
|
major
|
|
PromotGuiVizEdit
|
#188 |
problem with kubuntu 9.10 64bit
|
promot
|
defect
|
major
|
|
PromotGuiBase
|
#191 |
bug in documentation export of complex classes in structure writer
|
promot
|
defect
|
major
|
Promot 0.8.3
|
Promot
|
#192 |
Bug - Edit->Set module size
|
promot
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#193 |
Problem with visualization of independent modules containg submodules
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#199 |
File chooser does not open, exception is thrown
|
mirschel
|
defect
|
major
|
Promot 0.8.5
|
PromotGuiVizNav
|
#202 |
IDA error
|
promot
|
defect
|
major
|
|
DianaIntegrator
|
#209 |
specify another path for java in the promotenv-files for the non-plusdeps-version
|
promot
|
task
|
major
|
Promot 0.8.3
|
Promot
|