#80 |
FDL forgets about weak slots
|
ginkel
|
defect
|
major
|
|
Promot
|
#81 |
model-names are too long when having indices
|
promot
|
defect
|
major
|
Promot 1.0+
|
PromotKernel
|
#82 |
Calculation of initial values does not work with indices in all levels
|
ginkel
|
defect
|
major
|
|
PromotKernel
|
#84 |
When dropping classes from browser to constructionarea, the class does not appear in pallette
|
ginkel
|
defect
|
major
|
|
Promot
|
#85 |
Update of TerminalEdges after Class change undo fails, inner terminal has wrong id.
|
ginkel
|
defect
|
major
|
|
Promot
|
#86 |
Move lisp utilities to Promot directory (Win build)
|
ginkel
|
defect
|
major
|
|
Promot
|
#87 |
Linkproxy update from source
|
ginkel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#89 |
Store undo information in loadMdlFile
|
rempel
|
defect
|
major
|
Promot 0.8.2
|
Promot
|
#90 |
CmdDelete Redo should have classnames for finding promottreenodes
|
ginkel
|
defect
|
major
|
|
Promot
|
#92 |
Mapping for given attribute is erroneously not supported
|
mirschel
|
defect
|
major
|
|
PromotGuiVizNav
|
#93 |
Link edges reappear after dispose
|
ginkel
|
defect
|
major
|
|
Promot
|
#94 |
add superclass in palettewindow does not work
|
ginkel
|
defect
|
major
|
|
Promot
|
#95 |
remove default values not possible
|
mirschel
|
defect
|
major
|
|
PromotGuiVizEdit
|
#96 |
Adapters in logical models should be ignored in trace-not.
|
promot
|
defect
|
major
|
Promot 0.9
|
Promot
|
#97 |
Redirect promot binding to localhost
|
ginkel
|
defect
|
major
|
|
Promot
|
#98 |
Rewrite SignalHandler to shutdownHook
|
ginkel
|
defect
|
major
|
|
PromotGuiBase
|
#99 |
Close "Set Scenario Properties"- dialog when changing from local to global scenario
|
mirschel
|
defect
|
major
|
|
PromotGuiVizNav
|
#100 |
getSlots() causes exception
|
ginkel
|
defect
|
major
|
|
Promot
|
#101 |
confirming of delete-action for a promot-class
|
steinmet
|
enhancement
|
major
|
Promot 0.8.1
|
PromotGuiBrowser
|
#104 |
renaming of connected elements in the visual editor fails
|
steinmet
|
defect
|
major
|
Promot 0.8.1
|
PromotGuiVizEdit
|
#105 |
mehrere compounds an einem linknode fuehren im visual explorer zu ueberfluessigen kanten
|
mirschel
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizNav
|
#106 |
generate jacobian for diva export doesnt work -> remove option?
|
ginkel
|
defect
|
major
|
|
Promot
|
#108 |
update libsbml binding for lisp
|
rempel
|
task
|
major
|
Promot 1.0+
|
PromotSBML
|
#113 |
priorities for check results
|
steinmet
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#114 |
setting gif icon should be possible via gui
|
steinmet
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiBrowser
|
#115 |
restructure jars and used path to simplify installation (for non root)
|
rempel
|
defect
|
major
|
Promot 0.8.1
|
Promot
|
#116 |
tracking saved/modified status of classes
|
rempel
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiBrowser
|
#117 |
Different handling in function "Export to logical model"
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#118 |
Some hierarchical links are set not correctly in the HTML documentation
|
mirschel
|
defect
|
major
|
Promot 0.8.2
|
Promot
|
#119 |
attempted deletion of superclass-slots in visual editing should give a feedback..
|
steinmet
|
enhancement
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#122 |
feedback for checker status
|
steinmet
|
task
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#124 |
configure scripts doesnt work with autoconf 2.62
|
promot
|
defect
|
major
|
|
Promot
|
#129 |
broken internal state after renaming slots
|
rempel
|
defect
|
major
|
Promot 0.8.2
|
PromotKernel
|
#130 |
slots containing arrays can not be renamed or edited in the Editor
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#131 |
Connecting ports of TerminalNodes to internal ports gives a NullPointerException
|
steinmet
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#144 |
GINY: In submodules arcs point to the wrong anchor of the target node
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#155 |
ProMot does not work with new Java version
|
promot
|
defect
|
major
|
|
Promot
|
#158 |
Error "illegal path" when the explorer is drawing using graphics2d
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#159 |
problems in sbml import for multi-compartment models (22,90,161,162,163,164) from Biomodels
|
rempel
|
defect
|
major
|
Promot 0.8.2
|
PromotSBML
|
#166 |
Printer for subclass/superclass viewer does not work
|
promot
|
defect
|
major
|
Promot 0.9
|
PromotGuiBase
|
#168 |
Installation error
|
promot
|
defect
|
major
|
|
PromotGuiBase
|
#169 |
No compund found - Error when exporting a modularized logical model
|
promot
|
defect
|
major
|
Promot 0.8.2
|
Promot
|
#170 |
Missing exception in GUI while exporting in directory without permission
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiBrowser
|
#172 |
flag for incomplete truth ignored in CNA-import
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiBase
|
#173 |
uncatched NullPointerException in checker during layout after sbml import
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#174 |
copy kb directories in build for mpi
|
promot
|
defect
|
major
|
|
Promot
|
#176 |
Exception when using PFixedWidthStroke
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#177 |
Editor: unlock of old class in "save as..." does not work .
|
kolczyk
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#179 |
Fisheye zoom not considers edge handles
|
promot
|
enhancement
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#180 |
Copy&Paste of TerminalNodes
|
promot
|
defect
|
major
|
Promot 0.8.2
|
PromotGuiVizEdit
|
#181 |
access on array elements in cond expressions does not work
|
rempel
|
defect
|
major
|
Promot 0.8.3
|
PromotKernel
|
#182 |
instantiate model as slot, root references are broken
|
rempel
|
defect
|
major
|
Promot 0.8.3
|
PromotSBML
|
#183 |
Diana installation
|
miha
|
defect
|
major
|
|
Diana
|
#184 |
Error at Promot 0.8.2 startup on openSUSE 11.1 and x86_64 arch.
|
promot
|
defect
|
major
|
|
Promot
|
#185 |
Error at Promot 0.8.2 startup on openSUSE 11.1 and x86_64 arch.
|
promot
|
defect
|
major
|
|
Promot
|
#186 |
crash report
|
promot
|
defect
|
major
|
|
PromotGuiVizEdit
|
#188 |
problem with kubuntu 9.10 64bit
|
promot
|
defect
|
major
|
|
PromotGuiBase
|
#191 |
bug in documentation export of complex classes in structure writer
|
promot
|
defect
|
major
|
Promot 0.8.3
|
Promot
|
#192 |
Bug - Edit->Set module size
|
promot
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#193 |
Problem with visualization of independent modules containg submodules
|
mirschel
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizNav
|
#199 |
File chooser does not open, exception is thrown
|
mirschel
|
defect
|
major
|
Promot 0.8.5
|
PromotGuiVizNav
|
#202 |
IDA error
|
promot
|
defect
|
major
|
|
DianaIntegrator
|
#209 |
specify another path for java in the promotenv-files for the non-plusdeps-version
|
promot
|
task
|
major
|
Promot 0.8.3
|
Promot
|
#212 |
CreateLinks command works only one time
|
promot
|
defect
|
major
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#216 |
No positioning of edge nodes abfter "create links"
|
promot
|
defect
|
major
|
|
PromotGuiVizEdit
|
#222 |
Import CNA model uses outdated class for compounds
|
promot
|
enhancement
|
major
|
Promot 0.8.5
|
PromotGuiBase
|
#232 |
ProMoT crashes when opening a logical model in Visual Editor
|
promot
|
defect
|
major
|
Promot 0.8.5
|
PromotGuiVizEdit
|
#233 |
Length of menu entries
|
mirschel
|
enhancement
|
major
|
Promot 0.8.5
|
PromotGuiBase
|
#32 |
Write DAE initialization code from Promot
|
ginkel
|
defect
|
critical
|
|
PromotWriterDiana
|
#35 |
Add GUI dialog for Diana
|
ginkel
|
enhancement
|
critical
|
Promot 0.8
|
Promot
|
#44 |
Open a file fails
|
ginkel
|
defect
|
critical
|
|
PromotGuiBase
|
#60 |
two visual scenarios with the same name forces exception
|
mirschel
|
defect
|
critical
|
Promot 0.8.2
|
PromotGuiVizNav
|
#88 |
leave only one promot-config-build.lisp, no symlinks
|
ginkel
|
defect
|
critical
|
Promot 0.8
|
Promot
|
#164 |
very slow reload on large models
|
promot
|
defect
|
critical
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#167 |
Interference between multiple opened Visual Explorers
|
mirschel
|
defect
|
critical
|
Promot 0.8.2
|
PromotGuiVizNav
|
#187 |
duplicated edges in copy and paste
|
steinmet
|
defect
|
critical
|
Promot 0.8.3
|
PromotGuiVizEdit
|
#189 |
refactoring after rename or delete of TerminalNodes
|
promot
|
task
|
critical
|
Promot 0.8.3
|
PromotGuiBase
|