| 1 | (define-module |
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| 2 | :class "nucleus" |
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| 3 | :super-classes ("toymodel") |
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| 4 | :icon "../../SignalTransd/structure/icons/struct/nucleus.gif" |
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| 5 | :geometry-width "123" |
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| 6 | :geometry-height "332" |
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| 7 | :terminals |
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| 8 | (("input1" |
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| 9 | :is-eq-to "k3p1_k3p2_tf1.input1" |
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| 10 | :geometry-side "TOP" |
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| 11 | :geometry-position "0.101626016" |
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| 12 | :line nil) |
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| 13 | ("input2" |
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| 14 | :is-eq-to "k3p1_k3p2_tf1.input2" |
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| 15 | :geometry-side "TOP" |
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| 16 | :geometry-position "0.92276424")) |
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| 17 | :modules |
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| 18 | (("drain" |
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| 19 | :is-a "drain" |
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| 20 | :geometry-x "63" |
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| 21 | :geometry-y "282") |
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| 22 | ("k3p1_k3p2_tf1" |
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| 23 | :is-a "and-2" |
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| 24 | :geometry-x "63" |
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| 25 | :geometry-y "150") |
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| 26 | ("tf1" |
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| 27 | :is-a "transfactor" |
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| 28 | :geometry-x "62" |
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| 29 | :geometry-y "218")) |
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| 30 | :links |
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| 31 | (("k3p1_k3p2_tf1output_tf1input" |
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| 32 | :terminals ("k3p1_k3p2_tf1.output" "tf1.input" "drain.input") |
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| 33 | :nodes (("63" "210")) |
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| 34 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))))) |
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| 35 | |
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| 36 | |
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| 37 | (define-module |
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| 38 | :class "cell" |
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| 39 | :super-classes ("toymodel") |
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| 40 | :icon "../../SignalTransd/structure/icons/struct/cell.gif" |
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| 41 | :geometry-width "737" |
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| 42 | :geometry-height "832" |
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| 43 | :terminals |
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| 44 | (("input" |
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| 45 | :is-eq-to "struct_adapter_compound.input" |
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| 46 | :geometry-side "TOP" |
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| 47 | :geometry-position "0.33582088") |
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| 48 | ("input1" |
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| 49 | :is-eq-to "struct_adapter_compound1.input" |
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| 50 | :geometry-side "TOP" |
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| 51 | :geometry-position "0.1458616") |
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| 52 | ("input2" |
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| 53 | :is-eq-to "struct_adapter_gate.input" |
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| 54 | :geometry-side "TOP" |
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| 55 | :geometry-position "0.75373137") |
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| 56 | ("output" |
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| 57 | :is-eq-to "struct_adapter_compound1.output" |
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| 58 | :geometry-side "BOTTOM" |
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| 59 | :geometry-position "0.1458616" |
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| 60 | :line (("32" "688")))) |
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| 61 | :modules |
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| 62 | (("a1_not_ph1_k1" |
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| 63 | :is-a "somehow-2" |
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| 64 | :geometry-x "169" |
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| 65 | :geometry-y "403") |
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| 66 | ("a1_ph2" |
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| 67 | :is-a "activ" |
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| 68 | :geometry-x "678" |
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| 69 | :geometry-y "327") |
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| 70 | ("a2" |
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| 71 | :is-a "adapter" |
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| 72 | :geometry-x "543" |
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| 73 | :geometry-y "390") |
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| 74 | ("and_2_2" |
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| 75 | :is-a "and-2-2" |
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| 76 | :geometry-x "543" |
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| 77 | :geometry-y "474") |
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| 78 | ("drain" |
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| 79 | :is-a "drain" |
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| 80 | :geometry-x "393" |
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| 81 | :geometry-y "423") |
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| 82 | ("k1" |
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| 83 | :is-a "kinase" |
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| 84 | :geometry-x "169" |
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| 85 | :geometry-y "471") |
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| 86 | ("k1_k3r_k3p1" |
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| 87 | :is-a "and-2" |
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| 88 | :geometry-x "180" |
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| 89 | :geometry-y "538") |
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| 90 | ("k2" |
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| 91 | :is-a "kinase" |
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| 92 | :geometry-x "543" |
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| 93 | :geometry-y "533") |
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| 94 | ("k2_k3r_k3p2" |
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| 95 | :is-a "and-2" |
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| 96 | :geometry-x "531" |
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| 97 | :geometry-y "626") |
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| 98 | ("k3p1" |
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| 99 | :is-a "kinase" |
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| 100 | :geometry-x "179" |
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| 101 | :geometry-y "606") |
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| 102 | ("k3p2" |
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| 103 | :is-a "kinase" |
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| 104 | :geometry-x "530" |
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| 105 | :geometry-y "692") |
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| 106 | ("not_lr" |
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| 107 | :is-a "not" |
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| 108 | :geometry-x "256" |
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| 109 | :geometry-y "261") |
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| 110 | ("not_r1_r2_a2" |
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| 111 | :is-a "and-2" |
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| 112 | :geometry-x "543" |
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| 113 | :geometry-y "279") |
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| 114 | ("not_ud" |
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| 115 | :is-a "not-ud" |
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| 116 | :geometry-x "61" |
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| 117 | :geometry-y "399") |
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| 118 | ("nucleus" |
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| 119 | :is-a "nucleus" |
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| 120 | :geometry-x "386" |
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| 121 | :geometry-y "758") |
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| 122 | ("ph1" |
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| 123 | :is-a "phosphatase" |
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| 124 | :geometry-x "73" |
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| 125 | :geometry-y "606") |
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| 126 | ("ph2" |
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| 127 | :is-a "phosphatase" |
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| 128 | :geometry-x "678" |
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| 129 | :geometry-y "471") |
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| 130 | ("phosphatase" |
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| 131 | :is-a "phosphatase" |
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| 132 | :geometry-x "555" |
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| 133 | :geometry-y "197") |
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| 134 | ("r1" |
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| 135 | :is-a "receptor" |
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| 136 | :geometry-x "255" |
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| 137 | :geometry-y "198") |
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| 138 | ("r1_a1" |
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| 139 | :is-a "activ" |
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| 140 | :geometry-x "181" |
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| 141 | :geometry-y "198") |
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| 142 | ("source" |
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| 143 | :is-a "source" |
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| 144 | :geometry-x "393" |
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| 145 | :geometry-y "330") |
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| 146 | ("struct_adapter_compound" |
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| 147 | :is-a "struct-adapter-compound" |
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| 148 | :geometry-x "255" |
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| 149 | :geometry-y "52") |
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| 150 | ("struct_adapter_compound1" |
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| 151 | :is-a "struct-adapter-compound" |
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| 152 | :geometry-x "32" |
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| 153 | :geometry-y "274") |
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| 154 | ("struct_adapter_gate" |
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| 155 | :is-a "struct-adapter-gate" |
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| 156 | :geometry-x "555" |
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| 157 | :geometry-y "93")) |
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| 158 | :links |
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| 159 | (("a1_not_ph1_k1output_k1input" |
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| 160 | :terminals ("a1_not_ph1_k1.output" "k1.input" "k1_k3r_k3p1.input1" |
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| 161 | "and_2_2.input1") |
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| 162 | :nodes (("169" "463")) |
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| 163 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil))) |
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| 164 | ("a1_ph2output_ph2input" |
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| 165 | :terminals ("ph2.input" "and_2_2.input3" "a1_ph2.output") |
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| 166 | :nodes (("678" "463")) |
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| 167 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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| 168 | ("and_2_2output_k2input" |
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| 169 | :terminals ("and_2_2.output" "k2.input" "k2_k3r_k3p2.input2") |
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| 170 | :nodes (("543" "525")) |
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| 171 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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| 172 | ("k1_k3r_k3p1output_k3p1input" |
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| 173 | :terminals ("k1_k3r_k3p1.output" "k3p1.input" "nucleus.input1" |
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| 174 | "ph1.input") |
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| 175 | :nodes (("179" "598")) |
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| 176 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" (("179" "714"))) |
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| 177 | ("3" "-1" nil) ("-1" "-1" nil))) |
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| 178 | ("k2_k3r_k3p2output_k3p2input" |
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| 179 | :terminals ("k2_k3r_k3p2.output" "k3p2.input" "nucleus.input2") |
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| 180 | :nodes (("531" "684")) |
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| 181 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" (("531" "714"))))) |
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| 182 | ("not_lroutput_not_r1_r2_a2input1" |
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| 183 | :terminals ("not_lr.output" "not_r1_r2_a2.input1") |
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| 184 | :edges (("0" "1" nil))) |
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| 185 | ("not_r1_r2_a2output_a2input" |
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| 186 | :terminals ("not_r1_r2_a2.output" "a2.input" "and_2_2.input2") |
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| 187 | :nodes (("543" "382") ("543" "336")) |
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| 188 | :edges (("0" "-2" nil) ("1" "-1" nil) ("2" "-1" nil) |
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| 189 | ("-1" "-2" nil))) |
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| 190 | ("not_udoutput_a1_not_ph1_k1input1" |
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| 191 | :terminals ("not_ud.output" "a1_not_ph1_k1.input1")) |
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| 192 | ("r1_a1output_a1_not_ph1_k1input2" |
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| 193 | :terminals ("r1_a1.output" "a1_not_ph1_k1.input2")) |
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| 194 | ("sourceoutput_draininput" |
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| 195 | :terminals ("source.output" "drain.input")) |
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| 196 | ("struct_adapter_compoundoutput_r1input" |
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| 197 | :terminals ("struct_adapter_compound.output" "r1.input" |
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| 198 | "r1_a1.input1" "not_lr.input") |
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| 199 | :nodes (("255" "189")) |
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| 200 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil))) |
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| 201 | ("struct_adapter_gateoutput_not_r1_r2_a2input2" |
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| 202 | :terminals ("struct_adapter_gate.output" "not_r1_r2_a2.input2" |
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| 203 | "phosphatase.input") |
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| 204 | :nodes (("555" "192")) |
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| 205 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))))) |
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| 206 | |
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| 207 | |
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| 208 | (define-module |
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| 209 | :class "whole_model" |
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| 210 | :super-classes ("toymodel") |
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| 211 | :properties |
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| 212 | (("model" |
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| 213 | :value "yes")) |
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| 214 | :geometry-width "320" |
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| 215 | :geometry-height "433" |
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| 216 | :modules |
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| 217 | (("cell" |
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| 218 | :is-a "cell" |
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| 219 | :geometry-x "155" |
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| 220 | :geometry-y "262") |
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| 221 | ("lig1" |
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| 222 | :is-a "source" |
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| 223 | :geometry-x "122" |
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| 224 | :geometry-y "78") |
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| 225 | ("lig2" |
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| 226 | :is-a "source" |
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| 227 | :geometry-x "197" |
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| 228 | :geometry-y "78")) |
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| 229 | :links |
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| 230 | (("lig1output_cellinput" |
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| 231 | :terminals ("lig1.output" "cell.input")) |
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| 232 | ("lig2output_cellinput0" |
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| 233 | :terminals ("lig2.output" "cell.input0")))) |
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| 234 | |
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| 235 | |
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