1 | #| |
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2 | Library for logical analysis of the network structure of |
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3 | signal transduction networks |
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4 | |
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5 | Authors: Julio Saez-Rodriguez, Martin Ginkel, Rebecca Hemenway |
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6 | $Id$ |
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7 | |# |
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8 | |
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9 | (add-icon-dir "promot:kb;SignalTransd;libraries;") |
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10 | (add-icon-dir "promot:kb;SignalTransd;structure;") |
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11 | (add-mdl-dir "promot:kb;SignalTransd;structure;") |
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12 | |
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13 | |
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14 | (define-module |
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15 | :class "struct-library" |
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16 | :super-classes ("module")) |
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17 | |
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18 | (define-terminal |
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19 | :class "term-struct" |
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20 | :super-classes ("terminal") |
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21 | :geometry-width "13" |
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22 | :geometry-height "13" |
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23 | :link-color "blue" |
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24 | :variables |
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25 | (("a" |
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26 | :system-theoretic "state" |
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27 | :value "1"))) |
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28 | |
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29 | #| |
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30 | (define-variable |
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31 | :class "var-real-parameter" |
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32 | :super-classes ("variable") |
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33 | :system-theoretic "real-parameter") |
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34 | |
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35 | |
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36 | (define-variable |
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37 | :class "var-integer-parameter" |
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38 | :super-classes ("variable") |
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39 | :system-theoretic "integer-parameter") |
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40 | |# |
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41 | |
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42 | (define-terminal |
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43 | :class "term-struct-compound" |
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44 | :super-classes ("term-struct") |
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45 | :properties |
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46 | (("abstract" :value "no")) |
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47 | :icon "icons/struct/term-compound") |
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48 | |
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49 | |
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50 | (define-terminal |
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51 | :class "term-struct-gate" |
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52 | :super-classes ("term-struct")) |
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53 | |
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54 | |
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55 | (define-terminal |
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56 | :class "term-struct-input" |
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57 | :super-classes ("term-struct-gate") |
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58 | :properties |
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59 | (("abstract" :value "no")) |
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60 | :icon "icons/struct/term-input" |
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61 | :parameters |
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62 | (("a" |
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63 | :system-theoretic "input" |
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64 | :value "1"))) |
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65 | |
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66 | |
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67 | (define-terminal |
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68 | :class "term-struct-output" |
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69 | :super-classes ("term-struct-gate") |
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70 | :properties |
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71 | (("abstract" :value "no")) |
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72 | :icon "icons/struct/term-output" |
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73 | :parameters |
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74 | (("a" |
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75 | :system-theoretic "output" |
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76 | :value "1"))) |
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77 | |
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78 | |
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79 | (define-module |
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80 | :class "struct-adapter" |
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81 | :super-classes ("struct-library") |
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82 | :icon "icons/struct/struct-adapt" |
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83 | :terminals |
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84 | (("input" |
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85 | :is-a "term-struct" |
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86 | :geometry-side "top" |
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87 | :geometry-position "0.5") |
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88 | ("output" |
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89 | :is-a "term-struct" |
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90 | :geometry-side "bottom" |
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91 | :geometry-position "0.5"))) |
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92 | |
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93 | |
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94 | (define-module |
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95 | :class "struct-adapter-compound" |
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96 | :super-classes ("struct-adapter") |
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97 | :properties |
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98 | (("abstract" :value "no")) |
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99 | :icon "icons/struct/struct-adapt" |
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100 | :terminals |
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101 | (("input" |
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102 | :is-a "term-struct-compound") |
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103 | ("output" |
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104 | :is-a "term-struct-compound"))) |
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105 | |
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106 | |
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107 | (define-module |
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108 | :class "struct-adapter-gate" |
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109 | :super-classes ("struct-adapter") |
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110 | :icon "icons/struct/struct-adapt" |
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111 | :properties |
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112 | (("abstract" :value "no")) |
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113 | :terminals |
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114 | (("input" |
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115 | :is-a "term-struct-input") |
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116 | ("output" |
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117 | :is-a "term-struct-output"))) |
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118 | |
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119 | |
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120 | (define-module |
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121 | :class "gate" |
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122 | :super-classes ("struct-library") |
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123 | :variables |
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124 | (("conf" |
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125 | :system-theoretic "real-parameter" |
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126 | :documentation "confidency level of this element: 1-most established (values between 0 and 1)" |
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127 | :value "1") |
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128 | ("defval" |
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129 | :system-theoretic "integer-parameter" |
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130 | :documentation "Default value of the logical state of the reaction. empty = undefined") |
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131 | ("time" |
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132 | :system-theoretic "real-parameter" |
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133 | :documentation "parameter determining the time-scale, 1 being the fastest" |
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134 | :value "1") |
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135 | ("logexcl" |
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136 | :system-theoretic "integer-parameter" |
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137 | :documentation "parameter defining the gate to be excluded from logical |
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138 | analysis. Allowed Values 0 (included) or 1 (excluded), default 0." |
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139 | :value "0") |
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140 | ("ignore_in_export" |
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141 | :system-theoretic "integer-parameter" |
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142 | :documentation "parameter determining whether the gate is exported to the |
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143 | CellNetAnalyzer. Allowed Values 0 (exported) or 1 (ignored in export), default |
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144 | 0." |
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145 | :value "0") |
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146 | ("monotone" |
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147 | :system-theoretic "real-parameter" |
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148 | :documentation "parameter defining the gate to be monotone. Allowed Values 0 (non monotone) or 1 (monotone), default 0." |
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149 | :value "0.01") |
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150 | ("map_number" |
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151 | :system-theoretic "integer-parameter" |
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152 | :documentation "parameter determining the map in CellNetAnalyzer. Should be a positive int, default is 1." |
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153 | :value "1") |
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154 | ("textbox_type" |
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155 | :system-theoretic "integer-parameter" |
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156 | :documentation "parameter determining if the textbox in CellNetAnalyzer is editable (1), not-editable (2) or non-visible (3). The default value is 1." |
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157 | :value "1") |
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158 | )) |
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159 | |
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160 | |
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161 | (define-module |
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162 | :class "gate-2" |
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163 | :super-classes ("gate") |
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164 | :terminals |
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165 | (("input1" |
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166 | :is-a "term-struct-input" |
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167 | :geometry-side "top" |
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168 | :geometry-position "0.1") |
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169 | ("input2" |
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170 | :is-a "term-struct-input" |
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171 | :geometry-side "top" |
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172 | :geometry-position "0.9") |
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173 | ("output" |
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174 | :is-a "term-struct-output" |
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175 | :geometry-side "bottom" |
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176 | :geometry-position "0.5"))) |
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177 | |
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178 | |
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179 | (define-module |
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180 | :class "gate-2-2" |
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181 | :super-classes ("gate-2") |
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182 | :terminals |
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183 | (("input1" |
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184 | :is-eq-to "gate_2.input1" |
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185 | :geometry-side "TOP" |
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186 | :geometry-position "0.1") |
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187 | ("input2" |
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188 | :is-eq-to "struct_adapter.input" |
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189 | :geometry-side "TOP" |
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190 | :geometry-position "0.5") |
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191 | ("input3" |
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192 | :is-eq-to "gate_2b.input2" |
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193 | :geometry-side "TOP" |
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194 | :geometry-position "0.9") |
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195 | ("output" |
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196 | :is-eq-to "struct_adapterb.output" |
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197 | :geometry-side "BOTTOM" |
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198 | :geometry-position "0.5")) |
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199 | :modules |
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200 | (("gate_2" |
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201 | :is-a "gate-2" |
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202 | :geometry-x "48" |
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203 | :geometry-y "147") |
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204 | ("gate_2b" |
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205 | :is-a "gate-2" |
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206 | :geometry-x "228" |
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207 | :geometry-y "147") |
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208 | ("struct_adapter" |
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209 | :is-a "struct-adapter-gate" |
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210 | :geometry-x "137" |
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211 | :geometry-y "82") |
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212 | ("struct_adapterb" |
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213 | :is-a "struct-adapter-gate" |
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214 | :geometry-x "138" |
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215 | :geometry-y "209")) |
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216 | :links |
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217 | (("struct_adapterbinput_gate_2output" |
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218 | :terminals ("struct_adapterb.input" "gate_2.output" "gate_2b.output") |
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219 | :nodes (("138" "158")) |
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220 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil))) |
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221 | ("struct_adapteroutput_gate_2input2" |
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222 | :terminals ("struct_adapter.output" "gate_2.input2" "gate_2b.input1") |
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223 | :nodes (("138" "136")) |
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224 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))) |
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225 | :variables |
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226 | (("visibility" |
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227 | :value "1")) |
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228 | :parameters( |
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229 | ("gate_2.ignore_in_export" |
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230 | :value "parent.ignore_in_export") |
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231 | ("gate_2b.ignore_in_export" |
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232 | :value "parent.ignore_in_export") |
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233 | ("struct_adapter.ignore_in_export" |
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234 | :value "parent.ignore_in_export") |
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235 | ("struct_adapterb.ignore_in_export" |
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236 | :value "parent.ignore_in_export"))) |
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237 | |
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238 | |
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239 | (define-module |
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240 | :class "gate-3" |
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241 | :super-classes ("gate") |
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242 | :terminals |
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243 | (("input1" |
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244 | :is-a "term-struct-input" |
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245 | :geometry-side "top" |
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246 | :geometry-position "0.1") |
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247 | ("input2" |
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248 | :is-a "term-struct-input" |
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249 | :geometry-side "top" |
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250 | :geometry-position "0.5") |
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251 | ("input3" |
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252 | :is-a "term-struct-input" |
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253 | :geometry-side "top" |
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254 | :geometry-position "0.9") |
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255 | ("output" |
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256 | :is-a "term-struct-output" |
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257 | :geometry-side "bottom" |
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258 | :geometry-position "0.5"))) |
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259 | |
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260 | |
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261 | (define-module |
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262 | :class "gate-4" |
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263 | :super-classes ("gate") |
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264 | :terminals |
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265 | (("input1" |
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266 | :is-a "term-struct-input" |
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267 | :geometry-side "left" |
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268 | :geometry-position "0.5") |
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269 | ("input2" |
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270 | :is-a "term-struct-input" |
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271 | :geometry-side "top" |
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272 | :geometry-position "0.25") |
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273 | ("input3" |
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274 | :is-a "term-struct-input" |
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275 | :geometry-side "top" |
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276 | :geometry-position "0.77") |
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277 | ("input4" |
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278 | :is-a "term-struct-input" |
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279 | :geometry-side "right" |
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280 | :geometry-position "0.5") |
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281 | ("output" |
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282 | :is-a "term-struct-output" |
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283 | :geometry-side "bottom" |
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284 | :geometry-position "0.5"))) |
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285 | |
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286 | |
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287 | (define-module |
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288 | :class "gate-5" |
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289 | :super-classes ("gate") |
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290 | :terminals |
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291 | (("input1" |
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292 | :is-a "term-struct-input" |
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293 | :geometry-side "left" |
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294 | :geometry-position "0.9") |
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295 | ("input2" |
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296 | :is-a "term-struct-input" |
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297 | :geometry-side "left" |
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298 | :geometry-position "0.1") |
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299 | ("input3" |
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300 | :is-a "term-struct-input" |
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301 | :geometry-side "top" |
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302 | :geometry-position "0.5") |
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303 | ("input4" |
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304 | :is-a "term-struct-input" |
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305 | :geometry-side "right" |
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306 | :geometry-position "0.1") |
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307 | ("input5" |
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308 | :is-a "term-struct-input" |
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309 | :geometry-side "right" |
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310 | :geometry-position "0.9") |
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311 | ("output" |
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312 | :is-a "term-struct-output" |
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313 | :geometry-side "bottom" |
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314 | :geometry-position "0.5"))) |
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315 | |
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316 | (define-module |
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317 | :class "gate-6" |
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318 | :super-classes ("gate") |
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319 | :terminals |
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320 | (("input1" |
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321 | :is-a "term-struct-input" |
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322 | :geometry-side "left" |
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323 | :geometry-position "0.9") |
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324 | ("input2" |
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325 | :is-a "term-struct-input" |
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326 | :geometry-side "left" |
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327 | :geometry-position "0.1") |
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328 | ("input3" |
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329 | :is-a "term-struct-input" |
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330 | :geometry-side "top" |
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331 | :geometry-position "0.5") |
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332 | ("input4" |
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333 | :is-a "term-struct-input" |
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334 | :geometry-side "right" |
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335 | :geometry-position "0.1") |
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336 | ("input5" |
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337 | :is-a "term-struct-input" |
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338 | :geometry-side "right" |
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339 | :geometry-position "0.5") |
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340 | ("input6" |
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341 | :is-a "term-struct-input" |
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342 | :geometry-side "right" |
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343 | :geometry-position "0.9") |
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344 | ("output" |
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345 | :is-a "term-struct-output" |
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346 | :geometry-side "bottom" |
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347 | :geometry-position "0.5"))) |
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348 | |
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349 | (define-module |
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350 | :class "activ" |
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351 | :super-classes ("gate") |
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352 | :properties |
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353 | (("abstract" |
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354 | :value "no")) |
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355 | :icon "icons/struct/activ" |
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356 | :terminals |
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357 | (("input1" |
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358 | :is-a "term-struct-input" |
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359 | :geometry-side "top" |
---|
360 | :geometry-position "0.5") |
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361 | ("output" |
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362 | :is-a "term-struct-output" |
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363 | :geometry-side "bottom" |
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364 | :geometry-position "0.5"))) |
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365 | |
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366 | (define-module |
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367 | :class "and" |
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368 | :super-classes ("gate") |
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369 | :icon "icons/struct/and") |
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370 | |
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371 | (define-module |
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372 | :class "and-2" |
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373 | :super-classes ("and" "gate-2") |
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374 | :properties |
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375 | (("abstract" |
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376 | :value "no"))) |
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377 | |
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378 | (define-module |
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379 | :class "and-2-2" |
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380 | :super-classes ("and" "gate-2-2") |
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381 | :properties |
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382 | (("abstract" :value "no")) |
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383 | :modules |
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384 | (("gate_2" |
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385 | :is-a "and-2") |
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386 | ("gate_2b" |
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387 | :is-a "and-2")) |
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388 | :parameters( |
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389 | ("gate_2.ignore_in_export" |
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390 | :value "parent.ignore_in_export") |
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391 | ("gate_2b.ignore_in_export" |
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392 | :value "parent.ignore_in_export"))) |
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393 | |
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394 | (define-module |
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395 | :class "and-3" |
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396 | :super-classes ("and" "gate-3") |
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397 | :properties |
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398 | (("abstract" :value "no"))) |
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399 | |
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400 | |
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401 | (define-module |
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402 | :class "and-4" |
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403 | :super-classes ("and" "gate-4") |
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404 | :properties (("abstract" :value "no"))) |
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405 | |
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406 | |
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407 | (define-module |
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408 | :class "and-5" |
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409 | :super-classes ("and" "gate-5") |
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410 | :properties |
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411 | (("abstract" :value "no"))) |
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412 | |
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413 | |
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414 | (define-module |
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415 | :class "and-6" |
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416 | :super-classes ("and" "gate-6") |
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417 | :properties |
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418 | (("abstract" :value "no"))) |
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419 | |
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420 | (define-module |
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421 | :class "compound" |
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422 | :super-classes ("struct-library") |
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423 | :icon "icons/struct/comp" |
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424 | :parameters |
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425 | (("input.a" |
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426 | :system-theoretic "real-parameter")) |
---|
427 | :terminals |
---|
428 | (("input" |
---|
429 | :is-a "term-struct-compound" |
---|
430 | :geometry-side "top" |
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431 | :geometry-position "0.5")) |
---|
432 | :variables |
---|
433 | (("defval" |
---|
434 | :system-theoretic "integer-parameter" |
---|
435 | :documentation "Default value of the logical state of the reaction. empty = |
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436 | undefined") |
---|
437 | ("ignore_in_export" |
---|
438 | :system-theoretic "integer-parameter" |
---|
439 | :documentation "parameter determining whether the compound is exported to the |
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440 | CellNetAnalyzer. Allowed Values 0 (exported) or 1 (ignored in export), default |
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441 | 0." |
---|
442 | :value "0") |
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443 | ("map_number" |
---|
444 | :system-theoretic "integer-parameter" |
---|
445 | :documentation "parameter determining the map in CellNetAnalyzer. Should be a positive int, default is 1." |
---|
446 | :value "1") |
---|
447 | ("textbox_type" |
---|
448 | :system-theoretic "integer-parameter" |
---|
449 | :documentation "parameter determining if the textbox in CellNetAnalyzer is editable (1), not-editable (2) or non-visible (3). The default value is 1." |
---|
450 | :value "1") |
---|
451 | )) |
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452 | |
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453 | (define-module |
---|
454 | :class "receptor" |
---|
455 | :super-classes ("compound") |
---|
456 | :properties |
---|
457 | (("abstract" :value "no")) |
---|
458 | :icon "icons/struct/receptor") |
---|
459 | |
---|
460 | (define-module |
---|
461 | :class "ligand" |
---|
462 | :super-classes ("compound") |
---|
463 | :properties |
---|
464 | (("abstract" :value "no")) |
---|
465 | :icon "icons/struct/ligand") |
---|
466 | |
---|
467 | (define-module |
---|
468 | :class "kinase" |
---|
469 | :super-classes ("compound") |
---|
470 | :properties |
---|
471 | (("abstract" :value "no")) |
---|
472 | :icon "icons/struct/kinase") |
---|
473 | |
---|
474 | (define-module |
---|
475 | :class "dummy" |
---|
476 | :super-classes ("compound") |
---|
477 | :properties |
---|
478 | (("abstract" :value "no")) |
---|
479 | :icon "icons/struct/dummy") |
---|
480 | |
---|
481 | (define-module |
---|
482 | :class "phosphatase" |
---|
483 | :super-classes ("compound") |
---|
484 | :properties |
---|
485 | (("abstract" :value "no")) |
---|
486 | :icon "icons/struct/phosphatase") |
---|
487 | |
---|
488 | (define-module |
---|
489 | :class "ubiquitin-ligase" |
---|
490 | :super-classes ("compound") |
---|
491 | :properties |
---|
492 | (("abstract" :value "no")) |
---|
493 | :icon "icons/struct/ubiquitinLigase") |
---|
494 | |
---|
495 | (define-module |
---|
496 | :class "adapter" |
---|
497 | :super-classes ("compound") |
---|
498 | :properties |
---|
499 | (("abstract" :value "no")) |
---|
500 | :icon "icons/struct/adapter") |
---|
501 | |
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502 | (define-module |
---|
503 | :class "transfactor" |
---|
504 | :super-classes ("compound") |
---|
505 | :properties |
---|
506 | (("abstract" :value "no")) |
---|
507 | :icon "icons/struct/transfactor") |
---|
508 | |
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509 | (define-module |
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510 | :class "gtpase" |
---|
511 | :super-classes ("compound") |
---|
512 | :properties |
---|
513 | (("abstract" :value "no")) |
---|
514 | :icon "icons/struct/gpro") |
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515 | |
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516 | (define-module |
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517 | :class "gprotein" |
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518 | :super-classes ("compound") |
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519 | :properties |
---|
520 | (("abstract" :value "no")) |
---|
521 | :icon "icons/struct/gpro") |
---|
522 | |
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523 | (define-module |
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524 | :class "gef" |
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525 | :super-classes ("compound") |
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526 | :properties |
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527 | (("abstract" :value "no")) |
---|
528 | :documentation "guanine nucleotide exchange factor" |
---|
529 | :icon "icons/struct/gef") |
---|
530 | |
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531 | (define-module |
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532 | :class "gap" |
---|
533 | :super-classes ("compound") |
---|
534 | :properties |
---|
535 | (("abstract" :value "no")) |
---|
536 | :documentation "gtpase activating protein" |
---|
537 | :icon "icons/struct/gap") |
---|
538 | |
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539 | (define-module |
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540 | :class "reservoir" |
---|
541 | :super-classes ("compound") |
---|
542 | :properties |
---|
543 | (("abstract" :value "no")) |
---|
544 | :icon "icons/struct/reservoir") |
---|
545 | |
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546 | (define-module |
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547 | :class "other" |
---|
548 | :super-classes ("compound") |
---|
549 | :properties |
---|
550 | (("abstract" :value "no"))) |
---|
551 | |
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552 | (define-module |
---|
553 | :class "drug" |
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554 | :super-classes ("compound") |
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555 | :properties |
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556 | (("abstract" :value "no")) |
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557 | :icon "icons/struct/drug") |
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558 | |
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559 | (define-module |
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560 | :class "external-stimulus" |
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561 | :super-classes ("compound") |
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562 | :properties |
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563 | (("abstract" :value "no")) |
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564 | :icon "icons/struct/externalStimulus") |
---|
565 | |
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566 | (define-module |
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567 | :class "phenotype" |
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568 | :super-classes ("compound") |
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569 | :properties |
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570 | (("abstract" :value "no")) |
---|
571 | :icon "icons/struct/phenotype") |
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572 | |
---|
573 | |
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574 | (define-module |
---|
575 | :class "boundary" |
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576 | :super-classes ("gate")) |
---|
577 | |
---|
578 | |
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579 | (define-module |
---|
580 | :class "source" |
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581 | :super-classes ("boundary") |
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582 | :properties |
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583 | (("abstract" :value "no")) |
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584 | :icon "icons/struct/input" |
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585 | :terminals |
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586 | (("output" |
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587 | :is-a "term-struct-output" |
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588 | :geometry-side "bottom" |
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589 | :geometry-position "0.5"))) |
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590 | |
---|
591 | |
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592 | (define-module |
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593 | :class "drain" |
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594 | :super-classes ("boundary") |
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595 | :properties |
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596 | (("abstract" :value "no")) |
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597 | :icon "icons/struct/output" |
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598 | :terminals |
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599 | (("input" |
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600 | :is-a "term-struct-input" |
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601 | :geometry-side "top" |
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602 | :geometry-position "0.5"))) |
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603 | |
---|
604 | (define-module |
---|
605 | :class "not" |
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606 | :super-classes ("struct-library") |
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607 | :properties |
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608 | (("abstract" |
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609 | :value "no")) |
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610 | :icon "icons/struct/not" |
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611 | :terminals |
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612 | (("input" |
---|
613 | :is-a "term-struct-input" |
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614 | :geometry-side "top" |
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615 | :geometry-position "0.5") |
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616 | ("output" |
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617 | :is-a "term-struct-output" |
---|
618 | :geometry-side "bottom" |
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619 | :geometry-position "0.5"))) |
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620 | |
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621 | (define-module |
---|
622 | :class "or" |
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623 | :super-classes ("gate") |
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624 | :icon "icons/struct/or") |
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625 | |
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626 | (define-module |
---|
627 | :class "or-2" |
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628 | :super-classes ("or" "gate-2") |
---|
629 | :properties |
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630 | (("abstract" :value "no")) |
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631 | :terminals |
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632 | (("input1" |
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633 | :is-eq-to "activ.input1") |
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634 | ("input2" |
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635 | :is-eq-to "activ2.input1") |
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636 | ("output" |
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637 | :is-eq-to "struct_adapter.output")) |
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638 | :modules |
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639 | (("activ" |
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640 | :is-a "activ" |
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641 | :geometry-x "71" |
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642 | :geometry-y "81") |
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643 | ("activ2" |
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644 | :is-a "activ" |
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645 | :geometry-x "202" |
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646 | :geometry-y "84") |
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647 | ("struct_adapter" |
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648 | :is-a "struct-adapter-gate" |
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649 | :geometry-x "124" |
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650 | :geometry-y "176")) |
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651 | :links |
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652 | (("struct_adapterinput_activ2output" |
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653 | :terminals ("struct_adapter.input" "activ2.output" "activ.output") |
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654 | :nodes (("136" "112")) |
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655 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil)))) |
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656 | :parameters( |
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657 | ("activ.ignore_in_export" |
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658 | :value "parent.ignore_in_export") |
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659 | ("activ2.ignore_in_export" |
---|
660 | :value "parent.ignore_in_export") |
---|
661 | ("struct_adapter.ignore_in_export" |
---|
662 | :value "parent.ignore_in_export"))) |
---|
663 | |
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664 | (define-module |
---|
665 | :class "or-3" |
---|
666 | :super-classes ("or" "gate-3") |
---|
667 | :properties |
---|
668 | (("abstract" :value "no")) |
---|
669 | :geometry-width "438" |
---|
670 | :geometry-height "300" |
---|
671 | :terminals |
---|
672 | (("input1" |
---|
673 | :is-eq-to "activ.input1") |
---|
674 | ("input2" |
---|
675 | :is-eq-to "activ2.input1") |
---|
676 | ("input3" |
---|
677 | :is-eq-to "activ0.input1") |
---|
678 | ("output" |
---|
679 | :is-eq-to "struct_adapter.output")) |
---|
680 | :modules |
---|
681 | (("activ" |
---|
682 | :is-a "activ" |
---|
683 | :geometry-x "71" |
---|
684 | :geometry-y "81") |
---|
685 | ("activ0" |
---|
686 | :is-a "activ" |
---|
687 | :geometry-x "290" |
---|
688 | :geometry-y "85") |
---|
689 | ("activ2" |
---|
690 | :is-a "activ" |
---|
691 | :geometry-x "202" |
---|
692 | :geometry-y "84") |
---|
693 | ("struct_adapter" |
---|
694 | :is-a "struct-adapter-gate" |
---|
695 | :geometry-x "124" |
---|
696 | :geometry-y "176")) |
---|
697 | :links |
---|
698 | (("struct_adapterinput_activ2output" |
---|
699 | :terminals ("struct_adapter.input" "activ2.output" "activ.output" |
---|
700 | "activ0.output") |
---|
701 | :nodes (("136" "112")) |
---|
702 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil)))) |
---|
703 | :parameters( |
---|
704 | ("activ.ignore_in_export" |
---|
705 | :value "parent.ignore_in_export") |
---|
706 | ("activ0.ignore_in_export" |
---|
707 | :value "parent.ignore_in_export") |
---|
708 | ("activ2.ignore_in_export" |
---|
709 | :value "parent.ignore_in_export") |
---|
710 | ("struct_adapter.ignore_in_export" |
---|
711 | :value "parent.ignore_in_export"))) |
---|
712 | |
---|
713 | |
---|
714 | (define-module |
---|
715 | :class "or-4" |
---|
716 | :super-classes ("or" "gate-4") |
---|
717 | :properties |
---|
718 | (("abstract" :value "no")) |
---|
719 | :geometry-width "407" |
---|
720 | :geometry-height "300" |
---|
721 | :terminals |
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722 | (("input1" |
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723 | :is-eq-to "activ.input1") |
---|
724 | ("input2" |
---|
725 | :is-eq-to "activ2.input1") |
---|
726 | ("input3" |
---|
727 | :is-eq-to "activ0.input1") |
---|
728 | ("input4" |
---|
729 | :is-eq-to "activ1.input1") |
---|
730 | ("output" |
---|
731 | :is-eq-to "struct_adapter.output")) |
---|
732 | :modules |
---|
733 | (("activ" |
---|
734 | :is-a "activ" |
---|
735 | :geometry-x "55" |
---|
736 | :geometry-y "129") |
---|
737 | ("activ0" |
---|
738 | :is-a "activ" |
---|
739 | :geometry-x "250" |
---|
740 | :geometry-y "77") |
---|
741 | ("activ1" |
---|
742 | :is-a "activ" |
---|
743 | :geometry-x "330" |
---|
744 | :geometry-y "127") |
---|
745 | ("activ2" |
---|
746 | :is-a "activ" |
---|
747 | :geometry-x "122" |
---|
748 | :geometry-y "76") |
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749 | ("struct_adapter" |
---|
750 | :is-a "struct-adapter-gate" |
---|
751 | :geometry-x "172" |
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752 | :geometry-y "176")) |
---|
753 | :links |
---|
754 | (("struct_adapterinput_activ2output" |
---|
755 | :terminals ("struct_adapter.input" "activ2.output" "activ.output" |
---|
756 | "activ0.output" "activ1.output") |
---|
757 | :nodes (("174" "104")) |
---|
758 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil) |
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759 | ("4" "-1" nil)))) |
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760 | :parameters( |
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761 | ("activ.ignore_in_export" |
---|
762 | :value "parent.ignore_in_export") |
---|
763 | ("activ0.ignore_in_export" |
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764 | :value "parent.ignore_in_export") |
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765 | ("activ1.ignore_in_export" |
---|
766 | :value "parent.ignore_in_export") |
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767 | ("activ2.ignore_in_export" |
---|
768 | :value "parent.ignore_in_export") |
---|
769 | ("struct_adapter.ignore_in_export" |
---|
770 | :value "parent.ignore_in_export"))) |
---|
771 | |
---|
772 | |
---|
773 | (define-module |
---|
774 | :class "or-5" |
---|
775 | :super-classes ("or" "gate-5") |
---|
776 | :properties |
---|
777 | (("abstract" :value "no")) |
---|
778 | :geometry-width "407" |
---|
779 | :geometry-height "300" |
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780 | :terminals |
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781 | (("input1" |
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782 | :is-eq-to "activ.input1") |
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783 | ("input2" |
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784 | :is-eq-to "activ2.input1") |
---|
785 | ("input3" |
---|
786 | :is-eq-to "activ0.input1") |
---|
787 | ("input4" |
---|
788 | :is-eq-to "activ1.input1") |
---|
789 | ("input5" |
---|
790 | :is-eq-to "activ3.input1") |
---|
791 | ("output" |
---|
792 | :is-eq-to "struct_adapter.output")) |
---|
793 | :modules |
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794 | (("activ" |
---|
795 | :is-a "activ" |
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796 | :geometry-x "55" |
---|
797 | :geometry-y "129") |
---|
798 | ("activ0" |
---|
799 | :is-a "activ" |
---|
800 | :geometry-x "250" |
---|
801 | :geometry-y "77") |
---|
802 | ("activ1" |
---|
803 | :is-a "activ" |
---|
804 | :geometry-x "330" |
---|
805 | :geometry-y "127") |
---|
806 | ("activ2" |
---|
807 | :is-a "activ" |
---|
808 | :geometry-x "122" |
---|
809 | :geometry-y "76") |
---|
810 | ("activ3" |
---|
811 | :is-a "activ" |
---|
812 | :geometry-x "165" |
---|
813 | :geometry-y "62") |
---|
814 | ("struct_adapter" |
---|
815 | :is-a "struct-adapter-gate" |
---|
816 | :geometry-x "172" |
---|
817 | :geometry-y "176")) |
---|
818 | :links |
---|
819 | (("struct_adapterinput_activ2output" |
---|
820 | :terminals ("struct_adapter.input" "activ2.output" "activ.output" |
---|
821 | "activ0.output" "activ1.output" "activ3.output") |
---|
822 | :nodes (("174" "104")) |
---|
823 | :edges (("0" "-1" nil) ("1" "-1" nil) ("2" "-1" nil) ("3" "-1" nil) |
---|
824 | ("4" "-1" nil) ("5" "-1" nil)))) |
---|
825 | :parameters( |
---|
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---|
827 | :value "parent.ignore_in_export") |
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828 | ("activ0.ignore_in_export" |
---|
829 | :value "parent.ignore_in_export") |
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830 | ("activ1.ignore_in_export" |
---|
831 | :value "parent.ignore_in_export") |
---|
832 | ("activ2.ignore_in_export" |
---|
833 | :value "parent.ignore_in_export") |
---|
834 | ("activ3.ignore_in_export" |
---|
835 | :value "parent.ignore_in_export") |
---|
836 | ("struct_adapter.ignore_in_export" |
---|
837 | :value "parent.ignore_in_export"))) |
---|
838 | |
---|
839 | |
---|
840 | (define-module |
---|
841 | :class "somehow" |
---|
842 | :super-classes ("gate") |
---|
843 | :documentation " classes to represent incomplete truth tables") |
---|
844 | |
---|
845 | |
---|
846 | (define-module |
---|
847 | :class "somehow-2" |
---|
848 | :super-classes ("gate-2" "somehow") |
---|
849 | :properties |
---|
850 | (("abstract" :value "no")) |
---|
851 | :icon "icons/struct/somehow") |
---|
852 | |
---|
853 | (define-module |
---|
854 | :class "somehow-3" |
---|
855 | :super-classes ("gate-3" "somehow") |
---|
856 | :properties |
---|
857 | (("abstract" :value "no")) |
---|
858 | :icon "icons/struct/somehow") |
---|
859 | |
---|
860 | (define-module |
---|
861 | :class "somehow-4" |
---|
862 | :super-classes ("gate-4" "somehow") |
---|
863 | :properties |
---|
864 | (("abstract" :value "no")) |
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865 | :icon "icons/struct/somehow") |
---|
866 | |
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867 | (define-module |
---|
868 | :class "somehow-5" |
---|
869 | :super-classes ("gate-5" "somehow") |
---|
870 | :properties |
---|
871 | (("abstract" :value "no")) |
---|
872 | :icon "icons/struct/somehow") |
---|
873 | |
---|
874 | (define-module |
---|
875 | :class "struct-model" |
---|
876 | :super-classes ("module") |
---|
877 | :documentation "superclass that must be used as a marker for all structural network modules opened in the visual editor") |
---|
878 | |
---|
879 | |
---|
880 | |
---|